| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | 101 (0.250) +CTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAA |
34/146 | 0.5 | 100% | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family |
| ? | TrimmedAssembly_T66_contig_6 | 1 = | 0 (0.000) | intergenic (–/+72) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Pyruvate oxidase (EC 1.2.3.3) | |||||
Only 100 of 153 total aligned reads displayed.
AACGTAAGATCGATGTTGAGCCAGTTTTTGGCAAGATGAAGGCTTCTTTACATTTCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_42/134‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCGTCATATTT > TrimmedAssembly_T66_contig_6/1‑135 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| aaaGTAAGATCGATGTTGAACCAGTTTTTGGCTAGATGAAGGATTCTTTACATTTCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACT < 2:1426037/133‑1 cctGTTTTTGGCAAGATGAAGGATTCTTTACATTTCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACT < 2:959779/133‑1 GGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGT < 1:992977/136‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGCCGAGAAACCAAAATTCGTTTTCTCGTC < 2:1315070/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 2:2010713/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 2:1966013/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 1:401829/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 2:1568170/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 2:1257710/135‑1 TCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAACGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC < 1:347911/136‑1 TCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC < 2:468414/136‑1 TCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC < 2:1607694/136‑1 TCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC < 1:1203136/136‑1 TCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAAAGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC < 2:1980130/136‑1 CAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTT > 2:2539907/1‑136 CAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC > 2:394219/1‑132 CAACGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTCTGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATT < 1:1499384/135‑1 GTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTT > 1:880427/1‑136 TCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGACACCAAAATTCGTTTTCTCGTCCCATTTGCTT < 2:2090227/135‑1 CACCACGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:221056/136‑1 CACCAAGGCAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAAAGGGACGAGACACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 1:2098237/136‑1 CACCAAGGAAGCCGGACTCGTAATACTGGCGATAAACATTATGACACTGGTCACGGTAGGGACCAACTATAACAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 1:2437614/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGACACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:1194282/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:512262/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 1:2401973/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:429729/136‑1 ACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATTGGACGAGAAACCAAAATTCGTTTTCACGTCCCATTTGCTTAT > 1:1347986/1‑135 AAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAG < 2:75899/136‑1 AAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAG < 2:2256681/136‑1 CGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTA < 2:1456314/134‑1 CGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTA < 2:1149266/134‑1 CGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTA < 2:1149265/134‑1 GAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTA > 1:1580481/1‑136 CGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTC < 2:1353228/136‑1 AATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCAC < 1:2425057/135‑1 ATACTGGCGTTAAACATTATGACACTGGTCACGGTAGGGACCAACTTTAAACATCAAAGGCGGAAGCAAATGGGCCGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 1:237995/136‑1 ATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 2:1894322/136‑1 ATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 2:1862444/136‑1 ATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 2:2036392/136‑1 ATACTGGCGTAAAACATTATGAAACTGGTCACGGTAGGGACCAACTATAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 1:520382/136‑1 TACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCCAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG > 1:507407/1‑135 TACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG > 2:884056/1‑135 CTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCC > 1:1484640/1‑135 GGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCT < 1:1441115/136‑1 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGT > 1:2132135/1‑135 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGT > 1:219238/1‑135 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGT > 1:1544487/1‑135 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCAC < 2:144517/125‑1 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCAC > 1:144517/1‑125 TAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTC < 1:701610/136‑1 TAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTC < 1:1156152/136‑1 TAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTC < 1:1815172/136‑1 AAACATTCAGAAACTGGTCACGGAAGCGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGACACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCA < 1:2122884/136‑1 AACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCAC < 2:2020864/136‑1 CATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACAC < 1:1343708/136‑1 CATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACAC < 2:1918217/136‑1 CATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCAC > 1:970872/1‑134 TGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT < 2:1103813/136‑1 TGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT < 1:2539907/136‑1 TGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT < 1:835476/136‑1 TGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT > 2:716695/1‑136 TGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT < 1:488987/136‑1 TGAAACTGGTCACGGTAGGGACCAACATTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT < 1:143245/136‑1 GAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGATAAACCAAAAATCGTTTTCTCGTCCCATTTGCTTATAAAGAGGCTAGTTATGTCACAGCCTCTCGTTCAAAATGACTA > 1:1937370/1‑136 GAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTA > 2:1752093/1‑136 GAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTA > 1:1852434/1‑136 GAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTA > 2:307594/1‑136 GAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTA > 1:1544670/1‑136 GAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTA > 1:1937358/1‑136 TCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGT > 1:620718/1‑136 CACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAACCCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 1:2562737/136‑1 CACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 1:716695/136‑1 CACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 1:633708/136‑1 CACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 1:258808/136‑1 CACAGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 1:1148213/136‑1 ACGGTAGGGACCAACTTTAAAAATCAAATGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTGTCTCGTCCAATTTGCTTATACAGAGGCTAGTTATGTCACAGCCGCTCGTACACACTGACTATTCGACGTTG > 2:744072/1‑136 ACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTG > 2:575931/1‑136 ACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTG > 1:1115900/1‑136 ACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTG > 2:1556329/1‑136 ACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTG > 1:1636525/1‑136 AACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAA < 2:991849/136‑1 AACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAA < 1:1111610/136‑1 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 2:2424481/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 2:1260284/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 1:1729747/1‑135 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 2:2520311/1‑133 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 1:1413890/1‑133 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 1:327530/1‑133 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 1:208245/1‑133 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT > 2:1529132/1‑108 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT > 2:967669/1‑108 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT < 1:967669/108‑1 AAAATCAACGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGG < 2:1435498/136‑1 AATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTT > 1:2140588/1‑136 GCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGTAATAACTGGTTAGTGGTTTCAATTC > 2:2351882/1‑136 AAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGT > 2:386895/1‑136 AAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCG < 2:523969/135‑1 GACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCG > 2:87494/1‑135 GAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCGTCATA < 1:1258395/135‑1 AACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCGTCATATTT > 1:894116/1‑136 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AACGTAAGATCGATGTTGAGCCAGTTTTTGGCAAGATGAAGGCTTCTTTACATTTCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_42/134‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCGTCATATTT > TrimmedAssembly_T66_contig_6/1‑135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |