| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_22 | 1 = | 0 (0.000) | 164 (0.510) | 66/260 | 0.2 | 100% | coding (1/168 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
Only 100 of 164 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCTTTGGTTCCCAA > TrimmedAssembly_T66_contig_22/1‑135 | gtccaccagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTg > 1:1493385‑M1/133‑136 (MQ=255) ccaccagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGa > 2:911497‑M1/131‑135 (MQ=255) ccaccagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGa > 1:461809‑M1/131‑135 (MQ=255) ccaccagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacgtccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAg > 1:973816‑M1/131‑136 (MQ=255) cagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCAc > 2:964912‑M1/127‑136 (MQ=255) cagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCAc > 1:1352677‑M1/127‑136 (MQ=255) cagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCAc > 2:1226901‑M1/127‑136 (MQ=255) cagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCAc < 1:347785‑M1/10‑1 (MQ=255) cagcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCAc > 1:1597029‑M1/127‑136 (MQ=255) gcaccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGa < 2:1628942‑M1/12‑1 (MQ=255) ccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCa > 1:1134448‑M1/122‑136 (MQ=255) ccgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCa > 1:2267779‑M1/122‑136 (MQ=255) cgagtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCAt < 2:1997246‑M1/16‑1 (MQ=255) agtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATg < 1:1046804‑M1/17‑1 (MQ=255) agtgagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATg < 1:2423547‑M1/17‑1 (MQ=255) gagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCt > 1:687919‑M1/116‑135 (MQ=255) gagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCt > 1:117991‑M1/116‑135 (MQ=255) gagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTg < 1:916994‑M1/21‑1 (MQ=255) gagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTg < 1:142886‑M1/21‑1 (MQ=255) gagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTg < 1:292317‑M1/21‑1 (MQ=255) gagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTg < 2:798605‑M1/21‑1 (MQ=255) gagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTg < 2:538711‑M1/21‑1 (MQ=255) gagcgaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaaccaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTg < 2:481327‑M1/21‑1 (MQ=255) gaaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGtt < 2:177679‑M1/24‑1 (MQ=255) aaaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTAc < 1:194633‑M1/26‑1 (MQ=255) aaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACa < 2:226725‑M1/27‑1 (MQ=255) aaatcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACa < 2:1414615‑M1/27‑1 (MQ=255) tcgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTc > 2:1418766‑M1/107‑136 (MQ=255) cgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCg > 2:626964‑M1/106‑136 (MQ=255) cgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCg > 1:51006‑M1/106‑136 (MQ=255) cgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCg > 1:1702247‑M1/106‑136 (MQ=255) cgtgggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCg > 1:119404‑M1/106‑136 (MQ=255) ggaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCg > 1:1677298‑M1/102‑132 (MQ=255) gaaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacgggtagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGa < 1:753567‑M1/35‑1 (MQ=255) aaatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGaa > 2:2125699‑M1/100‑135 (MQ=255) aatttacaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACg > 2:1235413‑M1/99‑136 (MQ=255) acaagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGa > 2:1159147‑M1/94‑136 (MQ=255) aagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGAcc > 2:855508‑M1/92‑136 (MQ=255) aagtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGAcc > 2:2564852‑M1/92‑136 (MQ=255) agtgggacttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGAccc > 2:1721466‑M1/91‑136 (MQ=255) cttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCt < 1:2477345‑M1/53‑1 (MQ=255) cttccatcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCt < 2:457978‑M1/53‑1 (MQ=255) catcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATgg > 1:854214‑M1/80‑136 (MQ=255) catcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATgg > 1:177679‑M1/80‑136 (MQ=255) catcgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATgg > 1:177700‑M1/80‑136 (MQ=255) cgaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGcc < 2:1138223‑M1/60‑1 (MQ=255) gaccaacggccatcatctgttaatcaacgggtagcttttggtctttgggaagtagatacggtgctttctagtcgaGGTGAGTCTCGTTCATGTCTGGTTACATTCGTTGAACGTAAGACCCGACTTCtatggggca > 2:542551‑M1/76‑133 (MQ=255) gaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCa > 1:605982‑M1/76‑136 (MQ=255) gaacaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggcgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCa > 2:1576983‑M1/76‑136 (MQ=255) acaacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCAt > 2:347785‑M1/74‑135 (MQ=255) aacggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCaa < 2:2503588‑M1/65‑1 (MQ=255) acggccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCaaa > 1:2023547‑M1/71‑136 (MQ=255) ccaacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGcc > 1:1441048‑M1/67‑135 (MQ=255) aacaactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCt < 1:350502‑M1/72‑1 (MQ=255) aactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCg > 1:1516006‑M1/62‑92 (MQ=255) aactgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTaa < 2:2201700‑M1/74‑1 (MQ=255) actgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCa < 2:132385‑M1/61‑1 (MQ=255) actgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCa > 1:132385‑M1/61‑121 (MQ=255) actgttaatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAAcc > 1:533968‑M1/61‑136 (MQ=255) cctcaacggtgagctgttggtcattgtgatgtagatacggtgctttctagtcgcGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAACGCCCCTAACCGAACTg > 2:2458579‑M1/55‑136 (MQ=255) aatcaacggttagcttttgttcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 1:2015602‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 2:40901‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 1:1899533‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 2:2271493‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 2:2477345‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 2:384417‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 1:20597‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 1:2504975‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 2:1515022‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 2:336721‑M1/55‑136 (MQ=255) aatcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGAATTCTATGGGCCATCAAAGCCCCTAACCGAACTg > 2:1345969‑M1/55‑136 (MQ=255) atcaacggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg < 1:925441‑M1/82‑1 (MQ=255) acggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAg < 2:1939600‑M1/87‑1 (MQ=255) acggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAg > 1:538711‑M1/50‑136 (MQ=255) cggttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAg < 1:446778‑M1/87‑1 (MQ=255) ttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTg < 1:1424131‑M1/82‑1 (MQ=255) ttagcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCt < 2:139858‑M1/91‑1 (MQ=255) agcttttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTa < 1:1840946‑M1/93‑1 (MQ=255) ttggtcattgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAg > 1:716382‑M1/39‑136 (MQ=255) attgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCtt < 2:1427202‑M1/104‑1 (MQ=255) ttgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCttt > 2:1995337‑M1/32‑136 (MQ=255) ttgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCttt > 2:1980118‑M1/32‑136 (MQ=255) ttgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCttt > 1:226725‑M1/32‑136 (MQ=255) ttgggaagtagatacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCttt > 1:2341505‑M1/32‑136 (MQ=255) tacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTa > 2:191127‑M1/20‑134 (MQ=255) tacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTAt > 2:147694‑M1/20‑135 (MQ=255) tacggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATg > 2:916994‑M1/20‑136 (MQ=255) cggtgctttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATggg < 1:1905562‑M1/119‑1 (MQ=255) tttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCtt < 2:2188570‑M1/125‑1 (MQ=255) tttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCt > 2:810708‑M1/12‑135 (MQ=255) ttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTAt > 2:50108‑M1/11‑126 (MQ=255) ttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCttt < 1:1039580‑M1/126‑1 (MQ=255) ttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCttt < 1:640408‑M1/126‑1 (MQ=255) ttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCttt < 2:1196331‑M1/126‑1 (MQ=255) ttctagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCttt < 2:1806541‑M1/126‑1 (MQ=255) tagtcgaGGTGAGTCACGATCATGTCTTGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCTTTGGt > 2:728719‑M1/8‑136 (MQ=255) tagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCTTTGGt < 1:2342207‑M1/129‑1 (MQ=255) tagtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCTTTGGt > 1:460808‑M1/8‑136 (MQ=255) agtcgaGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCTTTGGt < 1:1684060‑M1/129‑1 (MQ=255) aGGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCTTTGGTTCCCaa < 2:161051‑M1/135‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAACCGAACTGCCAAGGCCTTAAATAGCGCCTTTGAAAAGTTTATGGGAACCTTTGGTTCCCAA > TrimmedAssembly_T66_contig_22/1‑135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |