| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_22 | 1 = | 0 (0.000) | 164 (0.510) | 66/260 | 0.2 | 100% | coding (1/168 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
Only 100 of 455 total aligned reads displayed.
GAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_41/302‑437 | gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:2466273/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:127398/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:1533039/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:1446237/1‑136 (MQ=255)gAATGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:1905566/1‑136 (MQ=255) aaTGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAa < 2:1308103‑M2/136‑2 (MQ=255) aaTGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa < 2:1033224/135‑1 (MQ=255) aaTGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa < 1:1711256/135‑1 (MQ=255) gTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtg > 1:1493385‑M2/1‑132 (MQ=255) gCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtc < 1:481474‑M2/136‑9 (MQ=255) gCCAGCACCGAGTGAGCGAAAATCGGGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtc < 2:2162100‑M2/136‑9 (MQ=255) cAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcac > 2:964912‑M2/1‑126 (MQ=255) cAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcac > 2:1905566‑M2/1‑126 (MQ=255) cAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcac > 2:1226901‑M2/1‑126 (MQ=255) ccGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatca > 2:539357‑M2/1‑121 (MQ=255) aGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatg < 1:1839898‑M2/135‑18 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACTGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctg < 2:2175803‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctg < 1:292317‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctg < 2:798605‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtct > 1:118174‑M2/1‑115 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctg < 2:344838‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtct > 1:850650‑M2/1‑115 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAACCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctg < 2:481327‑M2/136‑22 (MQ=255) tCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattc > 2:1418766‑M2/1‑106 (MQ=255) tCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattc > 1:143259‑M2/1‑106 (MQ=255) tCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattc > 1:2384422‑M2/1‑106 (MQ=255) tCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattc > 1:652958‑M2/1‑106 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcg > 1:1607479‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGATTTTGGTCATTGGGTAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcg > 1:230385‑M2/1‑105 (MQ=255) ggAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg < 2:1677298‑M2/132‑32 (MQ=255) aCAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaaga > 2:645160‑M2/1‑93 (MQ=255) aaGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacc > 2:571695‑M2/1‑91 (MQ=255) aaGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacc > 2:1622137‑M2/1‑91 (MQ=255) aCTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgactt > 1:1012580‑M2/1‑84 (MQ=255) cTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttct < 2:1476022‑M2/136‑54 (MQ=255) cTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttct < 1:942146‑M2/136‑54 (MQ=255) ttCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttcta > 1:2204459‑M2/1‑82 (MQ=255) tCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctat > 2:1446237‑M2/1‑81 (MQ=255) tCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctat > 1:2438150‑M2/1‑81 (MQ=255) cATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgg > 1:177700‑M2/1‑79 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca > 1:605982‑M2/1‑75 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcta > 2:1334049‑M2/1‑75 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcta > 1:1882552‑M2/1‑75 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcta > 1:1950711‑M2/1‑75 (MQ=255) acaacGTCCAACTTCTGTTTATCTTCGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca > 1:538696‑M2/1‑73 (MQ=255) acaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc < 1:1145204‑M2/136‑64 (MQ=255) acaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc > 1:317293‑M2/1‑73 (MQ=255) aacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaa < 2:2503588‑M2/136‑66 (MQ=255) acGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaa > 2:1965173‑M2/1‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcc < 1:1970108‑M2/135‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcc < 2:1867511‑M2/135‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcc < 1:568309‑M2/135‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaa > 1:2113661‑M2/1‑66 (MQ=255) ccAACAACTGTTAATCAACGGTGAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgttgaacgtaagacccgacttctatgggccatcaaagcc < 1:2031117‑M2/135‑70 (MQ=255) caacTTTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaa > 2:2533421‑M2/1‑62 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaa < 1:1670856‑M2/135‑75 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 1:1516006‑M2/1‑61 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg < 2:1516006‑M2/92‑32 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaat > 2:1269944‑M2/1‑61 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaat > 1:863554‑M2/1‑61 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 2:384417‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 1:2504975‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 1:68977‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 2:2271493‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:1574782‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:1408329‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:1284436‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:79281‑M2/1‑54 (MQ=255) aaTCAACGGCTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 2:1071731‑M2/1‑54 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc < 1:18942‑M2/116‑64 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctat > 1:2073430‑M2/1‑53 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctat < 2:2073430‑M2/108‑56 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgag < 2:885252‑M2/59‑7 (MQ=255) cAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggcta < 1:2560056‑M2/136‑86 (MQ=255) cGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaag < 2:2087529‑M2/135‑88 (MQ=255) cGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaag < 2:220295‑M2/135‑88 (MQ=255) ttAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggc < 1:764181‑M2/134‑90 (MQ=255) ttAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacc > 2:1725996‑M2/1‑45 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgccttt > 1:2341505‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 2:443806‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 1:1366708‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 1:1063436‑M2/1‑31 (MQ=255) aaGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaa > 2:1162725‑M2/1‑26 (MQ=255) ttaggtgcTTTCTAGTCGAggtgagtcacgatcttgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggcctttaatagcgcctttgaaaagtttat > 2:1990900‑M2/4‑19 (MQ=255) tACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatg > 2:916994‑M2/1‑19 (MQ=255) tACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttat > 2:137648‑M2/1‑19 (MQ=255) tACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttat > 1:1731461‑M2/1‑19 (MQ=255) cGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatggg < 2:1146256‑M2/136‑120 (MQ=255) gTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca > 2:306999‑M2/1‑15 (MQ=255) gCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaac > 2:2368488‑M2/1‑13 (MQ=255) ttCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaaccttt < 1:448206‑M2/136‑127 (MQ=255) ttCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaaccttt < 1:903632‑M2/136‑127 (MQ=255) ttCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttc < 2:1735146‑M2/136‑127 (MQ=255) ttCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttc < 2:2446617‑M2/136‑127 (MQ=255) ttCTAGTCGAagtgagtcacgatcaagtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttc < 2:1690945‑M2/136‑127 (MQ=255) tAGTCGAggtgagtcacgatcatgtcttgttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaacctttggt > 2:728719‑M2/1‑7 (MQ=255) aGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaacctttggtt > 1:404464‑M2/1‑6 (MQ=255) aGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttcggt < 2:823095‑M2/135‑130 (MQ=255) aggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaacctttggttcccaa < 2:161051‑M2/136‑136 (MQ=255) aagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttcggtccccaa < 2:1818735‑M2/136‑136 (MQ=255) | GAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_41/302‑437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |