New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_18 = 538540 (0.000)174 (0.660) 73/260 0.1 100% intergenic (+2/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– hypothetical protein/–
?TrimmedAssembly_T66_contig_37 = 853 0 (0.000)intergenic (‑310/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– Mobile element protein/–

Only 100 of 181 total aligned reads displayed.

GGATTGCCGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_37/720‑853
                                                                                                                                     |                                                                                                                                     
ggATTGCCGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCtt                                                                                                                                      <  2:1887535/135‑2 (MQ=255)
   ttGCCGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaaga                                                                                                                                   >  2:1363379‑M2/1‑131 (MQ=255)
    tGCCGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCttaaaca                                                                                                                                 <  2:1936683/136‑7 (MQ=255)
     gCCGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAAAAGGTTCTaagaacg                                                                                                                                >  1:2510657‑M2/1‑129 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCTTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAATCAGGTTCTaagaacttc                                                                                                                              <  2:2098963‑M2/136‑10 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  1:2286198‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  1:1859506‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  1:2491951‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  1:834298‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  2:1021458‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  1:1564662‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  2:1021480‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  2:2523432‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  2:25774‑M2/135‑9 (MQ=255)
       cGAGCTGCTTCTAAATCGGGCCGAATTAGGTCAAAGTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATCTCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  1:1026782‑M2/135‑9 (MQ=255)
       cGAGCTGCTACTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgt                                                                                                                               <  2:1126361‑M2/135‑9 (MQ=255)
         aGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccg                                                                                                                            <  1:121557‑M2/136‑12 (MQ=255)
            tgctTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtga                                                                                                                         <  2:945664‑M2/136‑15 (MQ=255)
            tgctTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgt                                                                                                                           >  2:1150802‑M2/1‑122 (MQ=255)
            tgctTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgt                                                                                                                           >  2:2286198‑M2/1‑122 (MQ=255)
            tgctTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgt                                                                                                                           >  1:535097‑M2/1‑122 (MQ=255)
            tgctTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgt                                                                                                                           >  2:512925‑M2/1‑122 (MQ=255)
            tgctTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgt                                                                                                                           >  1:895506‑M2/1‑122 (MQ=255)
                 cTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTCGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataaca                                                                                                                    <  2:82075‑M2/136‑20 (MQ=255)
                 cTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataaca                                                                                                                    <  1:87094‑M2/136‑20 (MQ=255)
                 cTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaaga                                                                                                                                   <  1:2136311‑M2/121‑5 (MQ=255)
                 cTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaaga                                                                                                                                   >  2:2136311‑M2/1‑117 (MQ=255)
                        gggCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgat                                                                                                             >  1:1931998‑M2/1‑110 (MQ=255)
                        gggCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgat                                                                                                             >  1:1021480‑M2/1‑110 (MQ=255)
                        gggCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgat                                                                                                             >  2:2071910‑M2/1‑110 (MQ=255)
                        gggCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgat                                                                                                             >  1:1021458‑M2/1‑110 (MQ=255)
                        gggCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgat                                                                                                             >  1:764872‑M2/1‑110 (MQ=255)
                        gggCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgat                                                                                                             >  1:2430037‑M2/1‑110 (MQ=255)
                            cGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatca                                                                                                           <  1:1959380‑M2/134‑29 (MQ=255)
                            cGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatca                                                                                                           <  1:1530362‑M2/134‑29 (MQ=255)
                               aTTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctc                                                                                                       >  1:1142072‑M2/1‑103 (MQ=255)
                               aTGAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTATGAACTATCATATCAAATTGTCCAGATTTTAAACATGTTCTaagaacgtccgtgataacatcacgatcatctc                                                                                                       >  2:2010316‑M2/1‑103 (MQ=255)
                                     tCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaag                                                                                                 >  1:1900650‑M2/1‑97 (MQ=255)
                                      cAAATTGGTGCCGTGAGGGATTGCAGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagac                                                                                               >  1:310653‑M2/1‑96 (MQ=255)
                                       aaaTTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcactatcatctcatcaaga                                                                                                <  2:125550‑M2/134‑40 (MQ=255)
                                       aaaTTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaaga                                                                                                <  2:1684818‑M2/134‑40 (MQ=255)
                                            ggTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctac                                                                                           <  1:1344347‑M2/134‑45 (MQ=255)
                                               gCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaa                                                                                      >  2:1223015‑M2/1‑87 (MQ=255)
                                               gCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATATTAAACAGGTTCTaagaacgaccgtgataacatcacgatcatctcatcaagacctacactaa                                                                                      >  2:595985‑M2/1‑87 (MQ=255)
                                               gCCGTGAGGGATTGCTGGGGTAGTTCAAAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaa                                                                                      >  2:1669661‑M2/1‑87 (MQ=255)
                                                 cGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaa                                                                                    <  1:1595137‑M2/136‑52 (MQ=255)
                                                    gAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacg                                                                                 >  2:2536629‑M2/1‑82 (MQ=255)
                                                    gAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacg                                                                                 >  2:1385116‑M2/1‑82 (MQ=255)
                                                    gAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacg                                                                                 >  1:1767004‑M2/1‑82 (MQ=255)
                                                    gAGGGATTGCTGGGGTAGTTCATAACTTATCATCCAATTTTTCAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacg                                                                                 >  2:2325688‑M2/1‑82 (MQ=255)
                                                      gggATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgt                                                                                                                           <  1:149328‑M2/92‑13 (MQ=255)
                                                        gATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgat                                                                               <  1:1213312‑M2/134‑57 (MQ=255)
                                                        gATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgat                                                                               <  2:1810015‑M2/134‑57 (MQ=255)
                                                          ttGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGTTTATatgaacgtccgtttttacatcaagatcatctcatcaagaccttcactaaaaacgatgct                                                                            >  2:1756205‑M2/1‑76 (MQ=255)
                                                             cTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattc                                                                        <  2:2068581‑M2/136‑64 (MQ=255)
                                                              tGGGGTAGTTCGTAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcg                                                                       <  2:1525595‑M2/136‑65 (MQ=255)
                                                              tGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcg                                                                       >  1:402078‑M2/1‑72 (MQ=255)
                                                               ggggTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgg                                                                      <  1:2242798‑M2/136‑66 (MQ=255)
                                                                gggTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcggg                                                                     <  1:1045820‑M2/136‑67 (MQ=255)
                                                                 ggTAGTACATAAGTTCTCATCCTTTTTTTGACCTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaccgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcggg                                                                     >  2:1112026‑M2/1‑69 (MQ=255)
                                                                  gTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggt                                                                    >  1:672593‑M2/1‑68 (MQ=255)
                                                                  gTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggt                                                                    >  1:2139164‑M2/1‑68 (MQ=255)
                                                                     gTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgat                                                                                                             <  2:1039249‑M2/91‑27 (MQ=255)
                                                                       tCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgatt                                                               >  2:1344347‑M2/1‑63 (MQ=255)
                                                                       tCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTATaagaacgtccgtgataacatcacgatcatctcatctagacctacactaaaaacgatgcttttcgggtcgattc                                                              >  2:1272220‑M2/1‑63 (MQ=255)
                                                                        cATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattc                                                              <  2:692025‑M2/135‑74 (MQ=255)
                                                                         aTAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattc                                                              <  2:876827‑M2/134‑74 (MQ=255)
                                                                             gTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgtt                                                        <  2:1377536‑M2/136‑80 (MQ=255)
                                                                             gTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgtt                                                        <  1:2534636‑M2/136‑80 (MQ=255)
                                                                             gTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgtt                                                        <  1:968002‑M2/136‑80 (MQ=255)
                                                                             gTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctactcgggtcgattccctgtt                                                        <  1:2349877‑M2/136‑80 (MQ=255)
                                                                                   atcCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctggg                                                  >  2:458800‑M2/1‑51 (MQ=255)
                                                                                   atcCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgg                                                   <  1:2169773‑M2/135‑85 (MQ=255)
                                                                                   atcCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgg                                                   <  1:2182837‑M2/135‑85 (MQ=255)
                                                                                   atcCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgg                                                   <  2:773122‑M2/135‑85 (MQ=255)
                                                                                   atcCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgg                                                   <  2:1410504‑M2/135‑85 (MQ=255)
                                                                                   atcCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgg                                                   <  1:650565‑M2/135‑85 (MQ=255)
                                                                                   atcCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgg                                                   <  1:563515‑M2/135‑85 (MQ=255)
                                                                                   atcCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggt                                                                    >  1:1386519‑M2/1‑51 (MQ=255)
                                                                                           tttGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgct                                          <  1:1567379‑M2/136‑94 (MQ=255)
                                                                                              gAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaatacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttg                                        <  2:1541044‑M2/135‑96 (MQ=255)
                                                                                                aCTATCATATCAAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcg                                     >  2:619885‑M2/1‑38 (MQ=255)
                                                                                                  tatcatatcaAATTGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgta                                   <  2:538565‑M2/136‑101 (MQ=255)
                                                                                                               tGTCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtc                      <  1:1595947‑M2/136‑114 (MQ=255)
                                                                                                                 tCCAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttggcgtaacacctgtgcgtcg                     <  1:1330426‑M2/135‑115 (MQ=255)
                                                                                                                  ccAGATTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcgg                    >  2:1045820‑M2/1‑20 (MQ=255)
                                                                                                                      aTTTTAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcg               <  2:1085359‑M2/136‑121 (MQ=255)
                                                                                                                       ttttAAACAGGTTCTaagaccgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgg              >  2:750718‑M2/1‑15 (MQ=255)
                                                                                                                       ttttAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgg              >  1:1410504‑M2/1‑15 (MQ=255)
                                                                                                                       ttttAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgg              >  2:2467655‑M2/1‑15 (MQ=255)
                                                                                                                       ttttAAACAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgg              >  1:610972‑M2/1‑15 (MQ=255)
                                                                                                                         ttAAACAGGTTCTaagaacgtccgtgataacatcacgat                                                                                                             >  1:2297740‑M2/1‑13 (MQ=255)
                                                                                                                           aaaCAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgggata          >  1:1525595‑M2/1‑11 (MQ=255)
                                                                                                                            aaCAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgggataa         >  1:2035269‑M2/1‑10 (MQ=255)
                                                                                                                             aCAGGTTCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgggataac        >  1:1670066‑M2/1‑9 (MQ=255)
                                                                                                                                  ttCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgggataacgatt    >  1:1258067‑M2/1‑4 (MQ=255)
                                                                                                                                  ttCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgggataacgatt    >  1:527778‑M2/1‑4 (MQ=255)
                                                                                                                                  ttCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctactcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgggataacgatt    >  2:2349877‑M2/1‑4 (MQ=255)
                                                                                                                                   tCTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgggataacgatta   >  2:1595137‑M2/1‑3 (MQ=255)
                                                                                                                                    cTaagaacgtccgtgataacatcacgatcatctcatcaagacctacactaaaaacgatgctattcgggtcgattccctgttgctgggccactgcttgtcgtaactcctgtgcgtcggcatcgggataacgattac  <  1:237441‑M2/135‑134 (MQ=255)
                                                                                                                                     |                                                                                                                                     
GGATTGCCGAGCTGCTTCTAAATCGGGCCGAATTAGTTCAAATTGGTGCCGTGAGGGATTGCTGGGGTAGTTCATAAGTTATCATCCTTTTTTTGAACTATCATATCAAATTGTCCAGATTTTAAACAGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_37/720‑853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.