New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_11 = 961420 (0.000)115 (0.730) 34/206 1.3 74.0% intergenic (+314/–) rasttk_feature_annotation_tool=elepa@bvbrc/– hypothetical protein/–
?TrimmedAssembly_T66_contig_9 = 72 81 (0.460)intergenic (–/+187) –/rasttk_feature_annotation_tool=elepa@bvbrc –/hypothetical protein

Only 100 of 154 total aligned reads displayed.

TAACTTGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_11/95982‑96142
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtctggaaaaatcttcggatttttcCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAAAAGCATCGGTCGCACCCGATACTCTACGAAATTATC‑‑‑‑‑‑  <  TrimmedAssembly_T66_contig_9/72‑1
                                                                                                                                                                                                                                               
TAACTTGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACA                                                                                                          <  2:2508625/135‑1
     TGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACCTTAGTCTCTAGAAACAAAACAGTTCTG                                                                                                    >  1:2365069/1‑136
     TGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTG                                                                                                    >  2:1523584/1‑136
     TGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTG                                                                                                    >  2:602761/1‑136
     TGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTG                                                                                                    >  2:461116/1‑136
     TGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTG                                                                                                    >  2:602766/1‑136
     TGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTG                                                                                                    >  2:203977/1‑136
      GAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTCATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGG                                                                                                   >  2:1418766/1‑136
          TTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAA                                                                                               >  2:335698/1‑136
            TTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAAT                                                                                             <  1:1523063/136‑1
            TTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAAT                                                                                             <  1:2281913/136‑1
               CCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGTTGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCT                                                                                           >  1:1905488/1‑135
               CCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCT                                                                                           >  1:1901416/1‑135
               CCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCT                                                                                           >  1:1901607/1‑135
               CCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCT                                                                                           >  1:1905313/1‑135
               CCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCT                                                                                           >  2:802820/1‑135
               CCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCT                                                                                           >  1:1141998/1‑135
                 cGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAAACGGCACTTTTTAATCATGATGGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCG                                                                                        <  2:1613264/135‑1
                    GGGTCTAAGCTGGCTGCTTTTGAAGTTAAGAATCGGCACTTTTTAATCATGATTGTTTAATAACTATGATTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCG                                                                                        <  1:839952/133‑1
                      GTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTT                                                                                   >  2:1683666/1‑136
                           AGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCA                                                                              <  2:687604/136‑1
                           AGCTGGCTGCTTTTGAACCTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGACAAATCTTCGGATTTTTCCA                                                                              <  1:1240059/136‑1
                                  TGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGt                                                                       <  1:1176786/136‑2
                                   GCTTTTGTACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGTAAAATCTTCGGTTGTTTCGAGACGTGtg                                                                      >  2:1171581/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTCATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  2:2536002/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:836398/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:2506186/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:616893/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:530209/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  2:551513/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  2:1204072/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  2:1502255/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  2:2412226/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  2:2200068/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:1824378/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:127669/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:2266170/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:185990/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:1839636/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGtt                                                                      >  1:1716422/1‑134
                                   GCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATATTCGGATTTTTCCAGACCTGtt                                                                      >  1:2148287/1‑134
                                         GAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGAT                                                                <  1:2403642/136‑1
                                         GAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGAT                                                                >  1:1416306/1‑136
                                                  AATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAA                                                       >  1:340435/1‑136
                                                   ATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAA                                                       <  1:974446/135‑1
                                                       GCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAA                                                  >  1:253101/1‑136
                                                         ACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAA                                                 <  1:1877170/135‑1
                                                              TTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAga                                           <  2:2374661/136‑3
                                                              TTAATCATGATTGTTTAATAACGATGAGTAAAAAACAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAga                                           <  1:2293847/136‑3
                                                               TAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATCGAAAATAAAAAAAgag                                          <  2:266130/136‑4
                                                               TAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCACTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAga                                           >  2:1835610/1‑133
                                                                    ATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCG                                    <  2:836398/136‑1
                                                                    ATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCG                                    <  2:1561129/136‑1
                                                                    ATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCG                                    <  1:602766/136‑1
                                                                    ATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCG                                    <  1:602761/136‑1
                                                                    ATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCG                                    <  2:682699/136‑1
                                                                          GTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGC                               >  2:972245/1‑135
                                                                          GTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGC                               >  2:916709/1‑135
                                                                          GTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGC                               >  1:2114121/1‑135
                                                                              AATAACGATGATTTATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACATAACAGGTCTGGATAAATCTTCGGATTTTTCCAGTCCTGTTTTTGATATTATAGAAAATAAAAAAAGAGCATCGGTCGCACCCG                          <  1:613162/136‑1
                                                                              AATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCG                          <  1:736792/136‑1
                                                                                TAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGAT                        <  2:1141998/136‑1
                                                                                   CGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATAC                      >  2:743499/1‑135
                                                                                   CGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATAC                      >  2:680121/1‑135
                                                                                        aggAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTAGATATAATAGTAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACG                >  2:1741181/4‑136
                                                                                             TAAAATAACGAGTCTGTGACTTAAGTCTCTAGATACAAAACTGGTCTGGAAAAATCTTCGGATTTTTCCTGACCTGTTTTTGATATAATAGAAAATAAACTTAGAGCATCGGTCGCACCCGATACTCTACGAAATT           <  2:1838850/136‑1
                                                                                                AAAAAAGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTAGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTAT         >  1:2370120/1‑135
                                                                                                 AAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCA                                                                              >  2:1323708/1‑66
                                                                                                 AAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCA                                                                              <  1:1323708/66‑1
                                                                                                  tagaGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCct      <  2:1911099/132‑3
                                                                                                  cAACGAGGCCGAGACATCAGTCTCTAGAAACAAAACAGCTCTCGAACAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAACAGACCATCGGTCGCACCCGATACTCTACGAAATTATCct      <  2:616736/135‑3
                                                                                                  AAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCct      <  1:2147888/136‑3
                                                                                                  AAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCct      <  1:368206/136‑3
                                                                                                  AAAAGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCct      <  1:1123112/136‑3
                                                                                                   ccCGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATACTAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctc     <  2:1675724/134‑4
                                                                                                    aaGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTTGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcg    >  2:1412176/3‑132
                                                                                                    aaGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcg    >  1:242539/3‑132
                                                                                                     aGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcga   >  1:113296/2‑131
                                                                                                     aGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcga   >  1:2461382/2‑131
                                                                                                     aGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcga   <  1:549952/135‑6
                                                                                                     aGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcga   >  1:996421/2‑131
                                                                                                     aGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCct      >  1:2188860/2‑131
                                                                                                     aGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCct      <  2:2188860/132‑3
                                                                                                     CGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAAGAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcga   >  2:2137655/1‑131
                                                                                                      GAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcgaa  <  2:2266170/136‑7
                                                                                                      GAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcgaa  >  1:141007/1‑130
                                                                                                        GGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCA                                                                              <  1:831474/59‑1
                                                                                                            GTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCG                          <  2:1326491/106‑1
                                                                                                            GTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCG                          >  1:1326491/1‑106
                                                                                                            GTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCG                                                                                        >  2:1587334/1‑45
                                                                                                            GTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCG                                                                                        <  1:1587334/45‑1
                                                                                                                       CTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGt                                                                       >  2:2106564/1‑50
                                                                                                                       CTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGt                                                                       <  1:2106564/51‑2
                                                                                                                             AAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGt                                                                       >  2:1183630/1‑44
                                                                                                                             AAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACT                     <  2:174403/94‑1
                                                                                                                             AAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTC                                 >  2:2223860/1‑82
                                                                                                                             AAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTCCA                                                                              <  1:991871/38‑1
                                                                                                                                                AAATCTTCGGATTTTTCCAGACCTGTTTTTGATATAATAGAAAATAAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCct      >  2:1904613/1‑88
                                                                                                                                                          ATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAAAAGCATCGGTCGCACCCGATACTCTACGAAATT           <  1:231846/76‑1
                                                                                                                                                          ATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAAAAGCATCGGTCGCACCCGATACTCTACGAAATT           >  2:231846/1‑76
                                                                                                                                                                                                                                               
TAACTTGAACTTTTCCCAGTGGGTCTAAGCTGGCTGCTTTTGAACTTAAGAATCGGCACGTTTTAATCATGATTGTTTAATAACGATGAGTAATAAAAAAACGAGGCTGTGACATAAGTCTCTAGAAACAAAACAGGTCTGGAAAAATCTTCGGATTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_11/95982‑96142
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtctggaaaaatcttcggatttttcCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAAAAGCATCGGTCGCACCCGATACTCTACGAAATTATC‑‑‑‑‑‑  <  TrimmedAssembly_T66_contig_9/72‑1

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.