New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_12 = 949310 (0.000)237 (0.840) 57/262 0.3 100% intergenic (+79/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– hypothetical protein/–
?TrimmedAssembly_T66_contig_35 = 1096 0 (0.000)intergenic (+10/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– Mobile element protein/–

Only 100 of 238 total aligned reads displayed.

TTGAAAAGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_12/94797‑94931
                                                                                                                                      |                                                                                                                                     
ttGAAAAGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGg                                                                                                                                      >  2:2179622‑M1/1‑135 (MQ=255)
  gAAAAGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgg                                                                                                                                     >  2:1910802‑M1/1‑133 (MQ=255)
  gAAAAGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgg                                                                                                                                     >  1:2084630‑M1/1‑133 (MQ=255)
    aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcg                                                                                                                                  >  2:1562423‑M1/1‑131 (MQ=255)
    aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcg                                                                                                                                  >  2:1319462‑M1/1‑131 (MQ=255)
    aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggc                                                                                                                                   <  2:2362342‑M1/135‑5 (MQ=255)
    aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggc                                                                                                                                   <  2:1490739‑M1/135‑5 (MQ=255)
    aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggc                                                                                                                                   <  2:2084630‑M1/135‑5 (MQ=255)
           ttGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtc                                                                                                                           <  1:2535667‑M1/136‑13 (MQ=255)
             gTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         <  1:1990840‑M1/136‑15 (MQ=255)
             gTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         <  2:2262540‑M1/136‑15 (MQ=255)
             gTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         <  1:952209‑M1/136‑15 (MQ=255)
             gTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         <  2:1227254‑M1/136‑15 (MQ=255)
             gTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         <  2:1814783‑M1/136‑15 (MQ=255)
                     cagcagGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagt                                                                                                                  >  2:1072118‑M1/1‑114 (MQ=255)
                           gTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGTGCGGCTTTTTGTGTATGgggcgaattgtcaaaataagtgcaaagg                                                                                                           >  1:326265‑M1/1‑108 (MQ=255)
                                gATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttg                                                                                                       >  2:1713176‑M1/1‑103 (MQ=255)
                                gATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttg                                                                                                       >  1:266830‑M1/1‑103 (MQ=255)
                                     aaCCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         <  1:495378‑M1/112‑15 (MQ=255)
                                     aaCCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         >  2:495378‑M1/1‑98 (MQ=255)
                                      aCCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaa                                                                                                <  1:1539193‑M1/136‑40 (MQ=255)
                                      aCCCAAAGTAATGGATAATTCTGATAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAAGTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaa                                                                                                <  1:1414401‑M1/136‑40 (MQ=255)
                                       ccccAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaa                                                                                               <  1:790856‑M1/136‑41 (MQ=255)
                                        cccAAGTAATGGATAATTCTGAAAAACATATTGAATAACTGACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                              >  2:2184537‑M1/1‑95 (MQ=255)
                                        cccAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                              >  2:2331218‑M1/1‑95 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                       >  1:871885‑M1/1‑88 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                       >  1:572372‑M1/1‑88 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                       >  1:235553‑M1/1‑88 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                       >  2:1737385‑M1/1‑88 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttc                                                                                         <  2:1651828‑M1/134‑47 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttc                                                                                         <  2:2093554‑M1/134‑47 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttc                                                                                         <  2:897622‑M1/134‑47 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttc                                                                                         <  2:1785796‑M1/134‑47 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttc                                                                                         <  1:2331218‑M1/134‑47 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaa                                                                                                <  2:2281256‑M1/127‑40 (MQ=255)
                                               aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaa                                                                                                >  1:2281256‑M1/1‑88 (MQ=255)
                                                    aTAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggg                                                                                  >  1:1562135‑M1/1‑83 (MQ=255)
                                                    aTAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggg                                                                                  >  1:1944661‑M1/1‑83 (MQ=255)
                                                    aTAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                              <  2:49194‑M1/124‑42 (MQ=255)
                                                    aTAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                              >  1:49194‑M1/1‑83 (MQ=255)
                                                      aaTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggt                                                                                >  2:244596‑M1/1‑81 (MQ=255)
                                                       aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               <  2:1773185‑M1/136‑57 (MQ=255)
                                                       aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               <  2:1086265‑M1/136‑57 (MQ=255)
                                                       aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               <  1:1987979‑M1/136‑57 (MQ=255)
                                                       aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               <  2:422011‑M1/136‑57 (MQ=255)
                                                       aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               <  1:1931551‑M1/136‑57 (MQ=255)
                                                       aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               <  1:2421052‑M1/136‑57 (MQ=255)
                                                       aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               <  2:1431753‑M1/136‑57 (MQ=255)
                                                           tGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcat                                                                           >  1:1026461‑M1/1‑76 (MQ=255)
                                                           tGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcat                                                                           >  2:1042311‑M1/1‑76 (MQ=255)
                                                           tGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcat                                                                           >  1:323460‑M1/1‑76 (MQ=255)
                                                                aaCATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagttt                                                                      >  2:1170390‑M1/1‑71 (MQ=255)
                                                                aaCATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagttt                                                                      >  1:558664‑M1/1‑71 (MQ=255)
                                                                             actaacCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgag                                                         <  1:650254‑M1/136‑79 (MQ=255)
                                                                              ctaacCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgagg                                                        <  2:355750‑M1/136‑80 (MQ=255)
                                                                                aacCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggac                                                      <  1:2438558‑M1/136‑82 (MQ=255)
                                                                                      tAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgat                                                >  1:1748302‑M1/1‑49 (MQ=255)
                                                                                       aGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatt                                               <  2:2014913‑M1/136‑89 (MQ=255)
                                                                                       aGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatt                                               <  1:1976240‑M1/136‑89 (MQ=255)
                                                                                          cGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgattta                                             <  1:1961593‑M1/135‑91 (MQ=255)
                                                                                           gCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgattta                                             >  2:2042720‑M1/1‑44 (MQ=255)
                                                                                           gCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               >  2:1695104‑M1/1‑44 (MQ=255)
                                                                                            ccGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                       <  1:1287495‑M1/91‑49 (MQ=255)
                                                                                              gATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaact                                          >  1:1724731‑M1/1‑41 (MQ=255)
                                                                                              gATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaact                                          >  1:1677509‑M1/1‑41 (MQ=255)
                                                                                              gATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaact                                          >  2:1312260‑M1/1‑41 (MQ=255)
                                                                                                tAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgctt                                      >  1:1479697‑M1/1‑39 (MQ=255)
                                                                                                tAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                               >  1:1172390‑M1/1‑39 (MQ=255)
                                                                                                 aaaTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttt                                     <  1:1122553‑M1/136‑99 (MQ=255)
                                                                                                   aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                   >  1:1211347‑M1/1‑36 (MQ=255)
                                                                                                   aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                   <  2:623421‑M1/136‑101 (MQ=255)
                                                                                                   aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                   <  2:2525396‑M1/136‑101 (MQ=255)
                                                                                                   aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                   <  2:2323698‑M1/136‑101 (MQ=255)
                                                                                                   aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                   <  1:2379968‑M1/136‑101 (MQ=255)
                                                                                                   aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         <  2:474231‑M1/50‑15 (MQ=255)
                                                                                                   aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                         >  1:474231‑M1/1‑36 (MQ=255)
                                                                                                     caacaaTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggc                                 >  1:1399924‑M1/1‑34 (MQ=255)
                                                                                                          agaccAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaactacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                            <  1:2408524‑M1/134‑108 (MQ=255)
                                                                                                          aTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                            <  2:1900687‑M1/136‑108 (MQ=255)
                                                                                                          aTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                            <  2:758104‑M1/136‑108 (MQ=255)
                                                                                                          aTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                            <  2:1561105‑M1/136‑108 (MQ=255)
                                                                                                          aTAACAATTGGGGCGTCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                            <  1:2257426‑M1/136‑108 (MQ=255)
                                                                                                               aaTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaac                       <  2:941651‑M1/136‑113 (MQ=255)
                                                                                                               aaTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaac                       <  2:2002632‑M1/136‑113 (MQ=255)
                                                                                                               aaTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaac                       <  1:1788723‑M1/136‑113 (MQ=255)
                                                                                                               aaTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaac                       <  2:572363‑M1/136‑113 (MQ=255)
                                                                                                                   ggggCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgt                     >  2:847367‑M1/1‑20 (MQ=255)
                                                                                                                   ggggCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgt                     >  2:710239‑M1/1‑20 (MQ=255)
                                                                                                                     ggcggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcct                  <  2:2435828‑M1/135‑118 (MQ=255)
                                                                                                                     ggcggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcct                  <  2:1382511‑M1/135‑118 (MQ=255)
                                                                                                                     ggcggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcct                  <  2:1193212‑M1/135‑118 (MQ=255)
                                                                                                                        ggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgt                >  1:1351620‑M1/1‑15 (MQ=255)
                                                                                                                         gcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgt                >  1:708760‑M1/1‑14 (MQ=255)
                                                                                                                         gcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatt                                               >  2:303731‑M1/1‑14 (MQ=255)
                                                                                                                          cTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                            <  1:2419378‑M1/120‑108 (MQ=255)
                                                                                                                          cTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagattaacactttgcgaggacgttgatttaactgcttttggcagtgt                            >  2:2419365‑M1/1‑13 (MQ=255)
                                                                                                                            ttttGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgttctgta          <  1:1633454‑M1/136‑126 (MQ=255)
                                                                                                                            ttttGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgttctgta          <  2:337341‑M1/136‑126 (MQ=255)
                                                                                                                              ttGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgttctgtata        <  2:275044‑M1/136‑128 (MQ=255)
                                                                                                                                    aTGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgttctgtataattatc  <  1:2162580‑M1/136‑134 (MQ=255)
                                                                                                                                      |                                                                                                                                     
TTGAAAAGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_12/94797‑94931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.