| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_13 | = 94334 | 0 (0.000) | 211 (0.910) | 64/260 | 0.4 | 73.0% | intergenic (+21/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Ala‑CGC/– |
| ? | TrimmedAssembly_T66_contig_9 | = 132 | 156 (0.700) | intergenic (–/+127) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
Only 100 of 211 total aligned reads displayed.
TGCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_13/94203‑94334 | gCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg < 1:2114388‑M1/136‑6 (MQ=255) gCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg < 1:2008003‑M1/136‑6 (MQ=255) gCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg < 1:903705‑M1/136‑6 (MQ=255) gCACGACTAGCATTGTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg < 2:771246‑M1/136‑6 (MQ=255) cACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagag > 1:314942‑M1/1‑130 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 1:1633276‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 1:2160254‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:417947‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 1:1853097‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:549952‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 1:1551244‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:2059691‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:1848729‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 1:990602‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 1:1147726‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:1334666‑M1/1‑127 (MQ=255) cTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtga < 2:2331867‑M1/136‑12 (MQ=255) cTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtg < 2:944733‑M1/135‑11 (MQ=255) aTTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacat < 1:1848667‑M1/134‑15 (MQ=255) ttGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtc < 1:263658‑M1/136‑20 (MQ=255) ggTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctct < 1:509231‑M1/135‑23 (MQ=255) tataCTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctag < 1:1641210‑M1/135‑25 (MQ=255) aCTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaac > 2:2422888‑M1/1‑108 (MQ=255) cTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaaca < 1:67225‑M1/136‑30 (MQ=255) tAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaa > 1:2345396‑M1/1‑106 (MQ=255) ttGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctg > 2:1461041‑M1/1‑96 (MQ=255) ttGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctg > 2:476965‑M1/1‑96 (MQ=255) ttGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctg > 2:1814373‑M1/1‑96 (MQ=255) ttGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctg > 1:2427233‑M1/1‑96 (MQ=255) ttGGGCCCTGAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctg < 2:142493‑M1/136‑41 (MQ=255) tGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctgg > 1:871447‑M1/1‑95 (MQ=255) tGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctgg < 2:101822‑M1/136‑42 (MQ=255) tGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtc > 2:508902‑M1/1‑95 (MQ=255) ggCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaa > 1:1830959‑M1/1‑93 (MQ=255) tAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatct > 1:172362‑M1/1‑87 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttc > 2:97733‑M1/1‑85 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttc > 1:1700205‑M1/1‑85 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttc > 2:2346003‑M1/1‑85 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctct > 2:1027116‑M1/1‑85 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGAATGCAGGAGGTAGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagactctagaaacaaaacaggtctggaaaaatcttc > 2:1612981‑M1/1‑85 (MQ=255) tCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcgg > 1:1928784‑M1/1‑83 (MQ=255) tCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcgg > 1:1352845‑M1/1‑83 (MQ=255) tCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcg < 1:166657‑M1/135‑53 (MQ=255) tCAGTTGGGAGAGCGCCTGCGTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcg < 1:948861‑M1/135‑53 (MQ=255) tGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctataaacaaaacaggtctggaaaaatcttcggatttt > 1:2243081‑M1/1‑78 (MQ=255) tGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggattt < 2:338958‑M1/135‑58 (MQ=255) ggAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggattttt > 2:583698‑M1/1‑76 (MQ=255) gagCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttcca < 1:487391‑M1/135‑63 (MQ=255) gagCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttcca < 2:1202317‑M1/135‑63 (MQ=255) gagCGCCTGCTTCGCAAGCAGGAGGTCGTCGGTTCAAATCCGGTCGGGTCCATTTTAATAGACATCAAACACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttcca < 1:1534514‑M1/135‑63 (MQ=255) gcgcCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccaga > 1:711346‑M1/1‑71 (MQ=255) ccTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccaga > 1:1341543‑M1/1‑68 (MQ=255) ccTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccaga > 2:2428172‑M1/1‑68 (MQ=255) ccTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccaga > 2:1697437‑M1/1‑68 (MQ=255) ccTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccaga > 2:914638‑M1/1‑68 (MQ=255) cTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgt < 2:2243081‑M1/136‑70 (MQ=255) tGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtt > 1:1581274‑M1/1‑66 (MQ=255) tGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtt > 1:1738829‑M1/1‑66 (MQ=255) tGCTTCGCATGCAGGAGGACGTCGGTTCAAATCCGGTAGGGTCCATTTTAATATACATCAAAAACAagaggctgtgccataagtctctagagacaaaacaggtctggaaaaatctacggatttttccagacatgta > 2:2308130‑M1/1‑66 (MQ=255) tCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttg > 2:728687‑M1/1‑62 (MQ=255) aTGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatat > 2:825692‑M1/1‑58 (MQ=255) gCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACCTCACCTTCAagaggctgtgacataagtgtctagtaacaaaacaggtctggaaaaatcttcggatgtttccagccctggttttgatatca > 2:752790‑M1/1‑56 (MQ=255) aggTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagac > 1:474035‑M1/1‑51 (MQ=255) aggTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaa > 1:252432‑M1/1‑51 (MQ=255) gtcgGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataa > 1:813855‑M1/1‑46 (MQ=255) gtcgGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataa > 1:1009786‑M1/1‑46 (MQ=255) tcgGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaa > 2:402936‑M1/1‑45 (MQ=255) ggTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg > 1:1305962‑M1/1‑43 (MQ=255) gTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAataggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaa > 1:558871‑M1/1‑42 (MQ=255) gTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagtggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaata > 2:2514939‑M1/1‑42 (MQ=255) gTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaa > 1:1775124‑M1/1‑42 (MQ=255) ttCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaa > 2:66023‑M1/1‑41 (MQ=255) cAAATCCGGGAGGGTCCATTTTAATAGACATCAAAAACAagaggctgcgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaaga < 2:379399‑M1/136‑98 (MQ=255) cGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcg < 1:1018382‑M1/136‑104 (MQ=255) cGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcg < 1:2397412‑M1/136‑104 (MQ=255) cGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcg < 1:2402700‑M1/136‑104 (MQ=255) cGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcg > 1:308188‑M1/1‑33 (MQ=255) cGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcg < 2:1300326‑M1/136‑104 (MQ=255) ggTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcgg < 2:1269588‑M1/136‑105 (MQ=255) tAGGGTCCATTTTAATAGACTTCAAAAACAagaggctgtgacataagtctctagaaacaaaaccggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaataagagcatcggt < 1:1083025‑M1/135‑106 (MQ=255) tAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaccaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaacaaaaaaagagcatcggt < 1:765758‑M1/135‑106 (MQ=255) tAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggt < 1:1903006‑M1/135‑106 (MQ=255) tAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggt < 2:1911046‑M1/135‑106 (MQ=255) gggTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgc > 2:1709109‑M1/1‑28 (MQ=255) gggTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgc > 2:201522‑M1/1‑28 (MQ=255) gggTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgc > 1:2286231‑M1/1‑28 (MQ=255) gggTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgc > 1:1111251‑M1/1‑28 (MQ=255) cATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccg < 2:1351670‑M1/136‑114 (MQ=255) cATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccg < 1:1395394‑M1/136‑114 (MQ=255) tAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttctgatttttccagacctgtttttgatataatagaaaataacaaaagagcatcggtcgcacccgatact < 2:1148296‑M1/136‑119 (MQ=255) tAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatact < 1:2512390‑M1/136‑119 (MQ=255) aaTAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatac > 1:121950‑M1/1‑17 (MQ=255) gACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacg > 2:863103‑M1/1‑13 (MQ=255) aTCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaa < 1:1461041‑M1/136‑127 (MQ=255) aTCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaa < 2:1700205‑M1/136‑127 (MQ=255) aTCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaa < 1:914638‑M1/136‑127 (MQ=255) aaaaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatta > 2:1652443‑M1/1‑7 (MQ=255) aaaaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatta > 1:121170‑M1/1‑7 (MQ=255) aaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatctaatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaattat > 1:2081176‑M1/1‑5 (MQ=255) aCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaattatcct < 1:597188‑M1/136‑134 (MQ=255) | TGCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_13/94203‑94334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |