| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_3 | = 176241 | 261 (1.020) | 319 (1.350) +CAGCAGAACT |
94/242 | 0.0 | 58.6% | coding (374/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | 176327 = | 228 (0.890) | coding (288/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein | |||||
Only 100 of 620 total aligned reads displayed.
GTAGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAG > TrimmedAssembly_T66_contig_3/176106‑176376 | agCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAagtag < 1:1834398/134‑1 (MQ=255) aGCACTTGATGGAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGca < 2:1211200‑M1/136‑3 (MQ=255) gCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAgtagta > 2:2046231/1‑135 (MQ=255) aCTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCATCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagca > 2:1270507‑M1/1‑131 (MQ=255) aCTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGtagtag < 1:731492/134‑1 (MQ=255) cTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAg < 1:2482473/136‑1 (MQ=255) tgatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcaga > 2:385199‑M1/1‑128 (MQ=255) tgatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGaa < 1:1482844/136‑1 (MQ=255) tgatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGaa < 2:2453064/136‑1 (MQ=255) gatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcaga > 2:1819875‑M1/1‑127 (MQ=255) gaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACtag > 2:362366/1‑136 (MQ=255) aGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACtagta < 1:425354/136‑1 (MQ=255) aGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACtagta < 2:171771/136‑1 (MQ=255) ttGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagc < 2:2270357‑M1/135‑17 (MQ=255) ttGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcag > 2:22945‑M1/1‑119 (MQ=255) tGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagctt < 1:804241‑M1/136‑19 (MQ=255) tGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagctt > 1:2283771‑M1/1‑118 (MQ=255) tGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCtt > 1:1192562/1‑136 (MQ=255) aCTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTg > 1:454488/1‑135 (MQ=255) cTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggc < 1:574121‑M1/136‑22 (MQ=255) aGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTa > 2:735536/1‑136 (MQ=255) gTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagtt > 1:1676578‑M1/1‑109 (MQ=255) ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGACGAAGCAGCACTCGTTGCACCACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGGAGCAGAACTAGTAGCTTGGCTAGCa > 2:1746927/1‑134 (MQ=255) ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagtt > 1:533682‑M1/1‑108 (MQ=255) ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagtt > 2:1410644‑M1/1‑108 (MQ=255) ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCa > 1:1970929/1‑134 (MQ=255) ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCa > 2:1547332/1‑134 (MQ=255) agcagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctga < 2:32826‑M1/135‑32 (MQ=255) agcagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGAt > 1:141189/1‑136 (MQ=255) gcagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGAtt > 1:1068363/1‑136 (MQ=255) cagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattg > 1:2050238‑M1/1‑102 (MQ=255) agAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATtgt > 1:1250684/1‑136 (MQ=255) aCTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggt < 2:1112510‑M1/136‑39 (MQ=255) aCTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgt < 2:1004787‑M1/133‑36 (MQ=255) aCTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTga < 2:2217071/135‑1 (MQ=255) cTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTgaag < 2:1020024/136‑1 (MQ=255) ttGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgc > 1:2443467‑M1/1‑96 (MQ=255) gCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagc > 2:1179499‑M1/1‑91 (MQ=255) gCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcag < 1:2524789‑M1/94‑4 (MQ=255) ttGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcact < 1:1004398‑M1/135‑47 (MQ=255) tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAATTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaaatagtagcttggctagttgatgattgtggtgcagcacttgtagc > 2:1081921‑M1/1‑84 (MQ=255) tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagc > 2:799051‑M1/1‑84 (MQ=255) tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagc > 1:2399205‑M1/1‑84 (MQ=255) tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagc > 1:1319770‑M1/1‑84 (MQ=255) tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtag < 2:963844‑M1/135‑52 (MQ=255) tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctga > 1:361456‑M1/1‑84 (MQ=255) agcagcTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagca < 2:88572‑M1/136‑54 (MQ=255) tGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctga < 1:2178618‑M1/108‑32 (MQ=255) ttGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtc < 1:1875400‑M1/136‑63 (MQ=255) tGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCg < 1:2020369/136‑1 (MQ=255) gCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgt > 2:1928378‑M1/1‑72 (MQ=255) gCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggt < 1:962452‑M1/110‑39 (MQ=255) gCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGAAGcagcagaactagtagcttggctagttgctgatagtggtgcagcacgtgtagcagcagaagtcgt > 1:925959‑M1/1‑72 (MQ=255) gCGTTGAGCTTGCAGAAGAAGCAGCACTCGTTGCAACACTCGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTc < 1:2251575/134‑1 (MQ=255) tGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggt < 2:2147076‑M1/135‑68 (MQ=255) tGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggt < 1:33371‑M1/135‑68 (MQ=255) gAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttg < 1:488041‑M1/136‑70 (MQ=255) gCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGtt > 2:1335382/1‑136 (MQ=255) gCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGt < 2:454488/135‑1 (MQ=255) tGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGaa > 1:846181/1‑136 (MQ=255) gCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtag < 1:2114274‑M1/136‑76 (MQ=255) tGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagta < 2:2385598‑M1/136‑78 (MQ=255) gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtcgtag > 2:2329501‑M1/1‑58 (MQ=255) gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtag > 2:603047‑M1/1‑58 (MQ=255) gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcact < 2:500735‑M1/104‑47 (MQ=255) gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAagca > 2:280745/1‑135 (MQ=255) agcagcACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtacca > 2:913781‑M1/1‑53 (MQ=255) agcagcACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtacc < 2:547038‑M1/135‑83 (MQ=255) agcagcACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTgaa < 2:2102846/136‑1 (MQ=255) agcagcACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTgaa < 2:618117/136‑1 (MQ=255) aCTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgact > 1:285936‑M1/1‑47 (MQ=255) aCTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgac < 1:880674‑M1/135‑89 (MQ=255) cGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATtgt > 2:646350/1‑79 (MQ=255) cGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCt > 1:655558/1‑136 (MQ=255) gCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagct > 2:1613290‑M1/1‑40 (MQ=255) aaCACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagctt < 1:1578079‑M1/135‑98 (MQ=255) acTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGtt < 1:301902/136‑1 (MQ=255) acTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGtt < 2:1364523/136‑1 (MQ=255) aaGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaat > 2:2005102‑M1/1‑30 (MQ=255) aaGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGa > 2:852885/1‑136 (MQ=255) aGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGa < 2:1967026/135‑1 (MQ=255) aGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGa < 1:1927496/135‑1 (MQ=255) aGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGa < 1:1109856/135‑1 (MQ=255) gTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatga > 1:1031849‑M1/1‑28 (MQ=255) gTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatga > 2:1650806‑M1/1‑28 (MQ=255) gTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTgaa > 2:1458084/1‑111 (MQ=255) aGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATtg < 2:241636/135‑1 (MQ=255) ttGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagatt < 2:1881802‑M1/136‑114 (MQ=255) tGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagatta > 1:2216523‑M1/1‑22 (MQ=255) tGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagatta > 2:1253049‑M1/1‑22 (MQ=255) ggCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcacc < 1:610223‑M1/124‑104 (MQ=255) ggCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTgc > 1:77708/1‑136 (MQ=255) tAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaagtt < 1:175867‑M1/136‑119 (MQ=255) tAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaagtt < 1:1376015‑M1/136‑119 (MQ=255) tAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaagt < 1:2145517‑M1/135‑118 (MQ=255) agcTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaagttaa < 1:1147074‑M1/134‑121 (MQ=255) cTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaagttaacatt > 1:1520091‑M1/1‑12 (MQ=255) agtagtATCAGAACTATTAGCTTGTATAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCAGTCGGTGCAGTTGTAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTagcag < 2:307699/134‑1 (MQ=255) agcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaagttaacattagctaactt < 1:1637962‑M1/135‑134 (MQ=255) gcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaagttaacattagctaacttgt > 1:2340092‑M1/1‑1 (MQ=255) | GTAGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAG > TrimmedAssembly_T66_contig_3/176106‑176376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |