| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_40 | = 631 | 0 (0.000) | 196 (0.500) | 59/262 | 0.1 | 100% | coding (1/420 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
Only 100 of 547 total aligned reads displayed.
GAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_41/302‑437 | gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGACATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCACCGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:1642593/1‑136 (MQ=255)gAATGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:35176/1‑136 (MQ=255)gAATGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:2380683/1‑136 (MQ=255) actGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACCAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa < 2:1504400/133‑1 (MQ=255) aaTGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa < 2:52219/135‑1 (MQ=255) aaTGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa < 2:2103430/135‑1 (MQ=255) tCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtga < 2:643749‑M2/136‑6 (MQ=255) ccGACAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgag > 2:1150688‑M2/1‑130 (MQ=255) gCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtc < 1:2501204‑M2/136‑9 (MQ=255) cAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcac > 1:317455‑M2/1‑126 (MQ=255) atcacCGTGTGAGCGAAAATATTGTGAATTTTACAAGTGGGTCTTCCATCGAAAAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacg > 1:95179‑M2/3‑125 (MQ=255) ccGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatca > 2:1238568‑M2/1‑121 (MQ=255) ccGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatca > 2:1168903‑M2/1‑121 (MQ=255) cGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcat < 2:614468‑M2/136‑17 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctg < 2:831470‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctg < 2:131659‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctg < 2:1470340‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctg < 2:891258‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtct > 2:715222‑M2/1‑115 (MQ=255) gAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTAAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggtt < 1:1397663‑M2/135‑25 (MQ=255) tCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattc > 1:1749351‑M2/1‑106 (MQ=255) tCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattc > 1:1766144‑M2/1‑106 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 1:545788‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 1:1089758‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 2:936106‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcg > 2:25637‑M2/1‑105 (MQ=255) aaTTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacg > 2:299258‑M2/1‑98 (MQ=255) aaGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacc > 1:414830‑M2/1‑91 (MQ=255) aaGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacc > 2:2154812‑M2/1‑91 (MQ=255) gACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgact < 1:1688781‑M2/135‑51 (MQ=255) tCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctat > 1:975759‑M2/1‑81 (MQ=255) aTCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgg < 1:2371358‑M2/135‑58 (MQ=255) cGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcc < 1:1974069‑M2/136‑61 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca > 2:1821978‑M2/1‑75 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca > 1:485785‑M2/1‑75 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca < 2:1630206‑M2/136‑62 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcta > 1:26752‑M2/1‑75 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcta > 2:2178383‑M2/1‑75 (MQ=255) gAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcta > 1:451885‑M2/1‑75 (MQ=255) aacaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca < 2:567707‑M2/135‑62 (MQ=255) aacaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca < 2:2260989‑M2/135‑62 (MQ=255) acaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccat > 2:693929‑M2/1‑73 (MQ=255) acaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc > 1:2418523‑M2/1‑73 (MQ=255) acaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc > 2:457351‑M2/1‑73 (MQ=255) aacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaa < 1:1330973‑M2/136‑66 (MQ=255) acGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaa > 1:2040908‑M2/1‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcc < 2:1732524‑M2/135‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggcca < 1:1213649‑M2/127‑62 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctat > 2:1907049‑M2/1‑66 (MQ=255) caacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaa > 1:1059053‑M2/1‑62 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaa < 1:59677‑M2/135‑75 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaat > 1:1428708‑M2/1‑61 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaat > 1:52016‑M2/1‑61 (MQ=255) acTGTTAATCCACGGGTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtctcgatcatgtctggttacatgcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatc > 2:1389196‑M2/1‑60 (MQ=255) acTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaacc > 1:1608460‑M2/1‑60 (MQ=255) aaTCCTCGGTGAGCTGTGGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 2:126630‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTTGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 2:1650729‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 2:1432022‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 2:2022562‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 1:2161343‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 1:1470340‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 1:852997‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 1:1013868‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:1677562‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 2:2302581‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:226544‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGGAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 2:1090148‑M2/1‑54 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg < 2:746238‑M2/135‑83 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg < 1:1872732‑M2/135‑83 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtaga > 2:1863097‑M2/1‑53 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacg < 1:1541594‑M2/134‑82 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc < 1:703434‑M2/116‑64 (MQ=255) cAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgcca < 1:649606‑M2/136‑86 (MQ=255) tCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccg < 1:788035‑M2/134‑101 (MQ=255) cATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcc > 1:1922073‑M2/1‑33 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgccttt > 1:1297122‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgccttt > 1:2091754‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 1:2294447‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 2:20531‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 1:2226987‑M2/1‑31 (MQ=255) ggAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaa < 2:1002412‑M2/136‑109 (MQ=255) ggAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaa < 2:2425829‑M2/136‑109 (MQ=255) ggAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 1:2345336‑M2/1‑28 (MQ=255) ggAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg < 2:2345336‑M2/110‑83 (MQ=255) gATACGGTGCTTCCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt < 1:1773712‑M2/126‑106 (MQ=255) gATACGGTGCTTCCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 2:1773712‑M2/1‑21 (MQ=255) tACGGTGCTTTCTCGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttat > 2:2469650‑M2/1‑19 (MQ=255) tACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttat > 2:1957053‑M2/1‑19 (MQ=255) gCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaa < 2:414663‑M2/134‑122 (MQ=255) gCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaa < 2:158789‑M2/134‑122 (MQ=255) gCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaa < 2:1706062‑M2/134‑122 (MQ=255) gCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaa < 2:2221801‑M2/134‑122 (MQ=255) ttCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaaccttt < 2:45026‑M2/136‑127 (MQ=255) ttCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaaccttt < 1:1805171‑M2/136‑127 (MQ=255) ttCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaaccttt < 1:2006744‑M2/136‑127 (MQ=255) ttCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttc < 1:88575‑M2/136‑127 (MQ=255) tCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaacctttg < 1:1172819‑M2/136‑128 (MQ=255) tCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttcg < 2:489555‑M2/136‑128 (MQ=255) tCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttcg < 1:220658‑M2/136‑128 (MQ=255) aGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaaaagtttatgggaacctttggt < 1:361888‑M2/135‑130 (MQ=255) | GAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_41/302‑437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |