| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_12 | 1 = | 0 (0.000) | 107 (0.300) +ATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTT |
29/138 | 0.7 | 100% | intergenic (–/‑8) | –/rasttk_feature_creation_tool=tRNAscan‑SE | –/tRNA‑Asn‑GTT |
| ? | TrimmedAssembly_T66_contig_28 | 1 = | 0 (0.000) | intergenic (–/+125) | –/rasttk_feature_creation_tool=RNA_reps_LSU_rRNA | –/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
Only 100 of 603 total aligned reads displayed.
CAATGCTGCTCCTTCAGCCACTCGGACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_12/134‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTG > TrimmedAssembly_T66_contig_28/1‑128 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| CAATGCTGCTCCTTCAGCCACTCGGACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTAT > 1:1860840/1‑136 ctTGCTGCTCCTTCCGTCACTCGGACATCTATACTTGTCTAACCGTACATAACTCCGACTGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGAGCTCTACCAACTGAGCTATGTCGGAATAATCGTATG < 2:888070/134‑1 AATGCTGCTCCTTCAGCCACTCGGACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATG < 1:1032434/136‑1 AATGCTGCTCCTTCAGCCACTCGGACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATG < 1:479469/136‑1 AATGCTGCTCCTTCAGCCACTCGGACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATG < 1:84502/136‑1 ATGCTGCTCCTTCAGCCACTCGGACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGG < 2:2315221/136‑1 CTTCAGCCACTCGGACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCT > 2:2719624/1‑136 GACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGA > 2:681973/1‑136 GACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGA > 1:244272/1‑136 ACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAAGAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGA < 2:1592653/136‑1 TTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTAC < 1:1343512/136‑1 TTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACT > 2:2210981/1‑134 TTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCC > 1:2334193/1‑129 GTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCG > 1:1285827/1‑136 GTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAAAAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACTTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCG > 1:904926/1‑136 CGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAA > 2:320926/1‑135 GGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTA > 1:865291/1‑135 CTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACT > 1:1098833/1‑132 CGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGA < 1:940607/136‑1 ACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGG > 2:2352326/1‑136 CATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGG < 2:724778/135‑1 CATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGG < 2:1330349/135‑1 CATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGG < 2:1169441/135‑1 CATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGG < 1:2182029/135‑1 CATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGG < 1:640802/135‑1 TTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGT < 2:2793353/135‑1 TAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGG > 2:572810/1‑126 CGCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCG > 2:1897146/1‑135 GCTCTACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGC < 2:1144311/135‑1 TACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCG < 2:2002943/136‑1 TACCAACTGAGCTATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCG < 1:560770/136‑1 ATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCTGCGCTAAGAAGCTTAACATCTGTGTTCGACATGGGAACAGGTGTATCCTTATCGCCATCGTCACCACACTATT > 2:1956727/1‑136 ATGTCGGAATAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATT > 2:247993/1‑136 TAATCGTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTT > 1:182073/1‑136 tgcATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGC < 2:2234169/133‑1 cgcATGGCGACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGC < 1:1543768/133‑1 GTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGC > 2:2044648/1‑135 GTATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGC > 2:2835650/1‑135 GGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCA > 2:135439/1‑136 GGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCA < 1:2312965/136‑1 GGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCA > 1:1718520/1‑136 GGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCA < 2:1759051/136‑1 GGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCA > 1:2743831/1‑136 GGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTAT > 2:183390/1‑117 GGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTC > 1:320460/1‑96 GGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTGAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCA > 1:53129/1‑136 GCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAG < 2:1196471/52‑1 CGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACT < 1:2384214/136‑1 TACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACA > 1:2155976/1‑136 TACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACA > 2:169749/1‑136 CCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTATCTTCTGTGTTCGTAATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATA < 2:2100923/136‑1 CCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCCCCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATA > 1:676668/1‑136 TCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGT < 1:2646415/72‑1 AGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAAT > 1:965452/1‑136 AGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAAT > 1:1207181/1‑136 AGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAAT > 1:187816/1‑136 AGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAAT > 1:793018/1‑136 AGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAAT > 2:264486/1‑136 AGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACAT > 1:1395728/1‑58 GGGAGCGATCCCCCAATTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATA > 2:1416510/1‑136 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACACTATCAAATA > 1:2799259/1‑136 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAGTA > 1:435664/1‑136 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATA > 1:1483065/1‑136 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATA > 2:2413057/1‑136 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATA > 1:270170/1‑136 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATA > 1:250788/1‑136 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTAT < 1:1925009/97‑1 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCA < 1:221279/88‑1 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTC < 2:634072/76‑1 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTC < 1:2563489/52‑1 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTC > 2:2563489/1‑52 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTG < 2:916591/49‑1 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTG > 1:1577181/1‑49 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGT > 2:473594/1‑48 GGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTGAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTCGACACTATCAAATA > 2:1094693/1‑136 GAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATAT < 1:1144190/135‑1 GAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAAT < 2:1544671/133‑1 GATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCA > 2:796693/1‑136 GATCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTC < 1:2050613/135‑1 TCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATA > 1:2103326/1‑136 TCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCAT < 2:523189/135‑1 TCCCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCAT < 2:1251153/135‑1 CCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATG > 1:608733/1‑136 CCCCAACTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACAATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATG > 2:2514616/1‑136 CTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCAT > 1:1623272/1‑127 CTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCATCATATGAACCGc > 1:738194/1‑135 CTACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATC < 2:357437/115‑1 ACTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGA > 2:1049270/1‑135 CTCTCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAAC < 2:1452999/136‑1 TCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACC > 1:1184024/1‑136 TCGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACC > 1:1439443/1‑136 CGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCA > 1:2462516/1‑136 CGGCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCA > 1:1163363/1‑136 GCGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAT > 1:112961/1‑136 CGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAT < 2:1285908/135‑1 CGCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAT < 2:840863/135‑1 GCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATT > 1:2257544/1‑135 GCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATT > 2:422153/1‑135 GCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATT < 1:355984/135‑1 GCTAAGAAGCTTAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATT > 1:2011622/1‑135 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| CAATGCTGCTCCTTCAGCCACTCGGACAACTCTCCATGGCTTACCGTAGATAACTCCGACAGGCGGGCTCGAACCGTCGACATCTTGATTAACAGTCAAGCGCTCTACCAACTGAGCTATGTCGGAATAATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_12/134‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTG > TrimmedAssembly_T66_contig_28/1‑128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |