New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Annotation_U21_Trimmed_contig_9 1 =0 (0.000)1111 (0.800) 120/260 1.0 100% coding (1/936 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 Plasmid replication initiation protein
?Annotation_U21_Trimmed_contig_9 = 10661 NA (NA)intergenic (+719/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– ORF9/–

Only 100 of 1111 total aligned reads displayed.

ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Annotation_U21_Trimmed_contig_9/133‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACC  <  Annotation_U21_Trimmed_contig_9/10661‑10531
                                                                                                                                                                                                                                                                        
ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATATGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAA                                                                                                                                   <  1:1409658/135‑1
 TCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAAT                                                                                                                                  <  1:2248729/135‑1
      CTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATGACAC                                                                                                                             <  2:1926187/135‑1
      CTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACAC                                                                                                                             <  1:453326/135‑1
        GTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACC                                                                                                                            >  2:1319755/1‑134
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  2:863670/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  1:2717055/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  1:2497182/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  2:227182/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  2:2412081/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  2:2523306/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  2:531947/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  2:2626419/135‑1
           TGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                          <  2:1150921/133‑1
               CTCCCTTATCACTCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAA                                                                                                                     <  2:2367641/134‑1
               CTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAA                                                                                                                     <  1:48557/134‑1
                    TTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTAAATATGGGTGAATTTACGTAACGGAATGGTATTAATTTCAGGATAATATTTTATAAGTTCAATGCTCATAATCACACCTCCACAACTATaa                                                                                                               >  1:2418814/1‑133
                     TATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTAT                                                                                                              <  1:1556261/135‑1
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  2:1042673/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:1139524/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:637230/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:2608113/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:2530758/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:1440406/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:994535/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:1796415/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    <  1:2287204/135‑1
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:1239654/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    <  2:355254/135‑1
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:2117983/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  2:439449/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  2:1349118/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:1933125/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:1485208/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATACATTTCAATAGTGGTGAATTTACGTAACGGAATGTTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  1:9218/1‑135
                               ACGAGAAATAATAGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                    >  2:1518516/1‑135
                                  AGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGA                                                                                                 >  2:1656925/1‑135
                                    AAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATT                                                                                               >  2:926929/1‑135
                                         ATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTT                                                                                           >  2:1683911/1‑134
                                               AAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAAC                                                                                     <  1:413916/134‑1
                                               AAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAAC                                                                                     <  1:1184707/134‑1
                                               AAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAAC                                                                                     <  1:569089/134‑1
                                                AAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGA                                                                                   <  1:1723242/135‑1
                                                AAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTAATAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGA                                                                                   <  2:289855/135‑1
                                                 AAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGAT                                                                                  <  2:2133088/135‑1
                                                             TTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAA                                                                      <  1:1002617/135‑1
                                                             TTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAA                                                                      <  2:177294/135‑1
                                                               CAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACC                                                                    <  2:557894/135‑1
                                                                   AGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGT                                                                >  2:627341/1‑135
                                                                   AGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGT                                                                >  2:1273173/1‑135
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATA                                                           >  2:2229272/1‑135
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGAT                                                            <  1:802097/134‑1
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGAT                                                            <  1:1892186/134‑1
                                                                          AATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAA                                                         >  1:1651179/1‑135
                                                                          AATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAA                                                         >  1:2670817/1‑135
                                                                          AATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGAT                                                            <  2:474350/132‑1
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                       >  1:1353862/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                       >  2:2600186/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                       >  2:2455760/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                       >  2:1403005/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                       >  2:1857400/1‑134
                                                                                   AACGGAATGGTATTAAGTTCAGGATCATAGTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAA                                                >  1:1989839/1‑135
                                                                                    cCGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAA                                                <  2:2171860/133‑1
                                                                                        AATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCG                                           >  1:87018/1‑135
                                                                                        AATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATAT                                                                                                            >  1:384932/1‑70
                                                                                             TATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                      >  2:2307680/1‑135
                                                                                              ATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                      <  1:1603487/134‑1
                                                                                              ATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                      <  1:2168363/134‑1
                                                                                              ATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                      <  2:2075500/134‑1
                                                                                              ATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                      <  1:2048787/134‑1
                                                                                                  AGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACA                                 >  1:76485/1‑135
                                                                                                  AGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACA                                 >  2:1211020/1‑135
                                                                                                     TCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGAC                              >  1:2580476/1‑135
                                                                                                     TCAGGATCATATTTTATAAGGTCATTGCTGATAATCACACCTCCTCAACTATTATATAAAATCAACGATTGTTTATCAACGATGACCATTAAAAACCTCGTTGATAAACAGACCAAACCTCGGTGATAATCAGAC                              >  2:1722418/1‑135
                                                                                                       AGGAACATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACATACAA                            >  1:2754033/1‑135
                                                                                                         GATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                           >  2:1610338/1‑134
                                                                                                         GATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                           >  2:383762/1‑134
                                                                                                         GATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                           >  2:1471062/1‑134
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAAa                         >  2:2657930/1‑134
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                           >  1:524426/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                           >  2:2728773/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                           >  1:1052374/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                           >  2:2566007/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                      <  1:15096/122‑1
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACATCGTTGATAAACATACAAA                           >  2:698350/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACATCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAAC                         >  2:1102456/1‑135
                                                                                                           TCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA                          <  1:354955/133‑1
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                  >  1:2466979/1‑135
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                  >  1:69065/1‑135
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                  >  1:1823437/1‑135
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                  >  2:1546482/1‑135
                                                                                                                   TATAATTTCATTGCTCATAATCAAACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                <  2:1995613/135‑1
                                                                                                                   TATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                <  1:1850513/135‑1
                                                                                                                   TATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                <  1:1273397/135‑1
                                                                                                                   TATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                <  2:1797236/135‑1
                                                                                                                      AAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAA             >  1:2318706/1‑135
                                                                                                                           CATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGAC        >  1:314381/1‑135
                                                                                                                               GCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA    <  1:1319755/135‑1
                                                                                                                               GCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA    <  2:79618/135‑1
                                                                                                                               GCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA     >  1:965163/1‑134
                                                                                                                                                                                                                                                                        
ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Annotation_U21_Trimmed_contig_9/133‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACC  <  Annotation_U21_Trimmed_contig_9/10661‑10531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.