New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | Annotation_U21_Trimmed_contig_9 | 1 = | 0 (0.000) | 1965 (0.860) | 151/258 | 0.5 | 100% | coding (1/936 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Plasmid replication initiation protein |
? | Annotation_U21_Trimmed_contig_9 | = 10661 | NA (NA) | intergenic (+719/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | ORF9/– |
ACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTTAATGGTGATCGTTGATAAACAATCGTTGATTTTATATAATAGTTGTGGAGGTGTGATT > Annotation_U21_Trimmed_contig_9/10527‑10661 | aCGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTTAATGGTGATCGTTGATAAACAATCGTTGATTTTATATAATAGTTGTGGAGGTGTGAtt < 1:528184/135‑1 (MQ=255) | ACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTTAATGGTGATCGTTGATAAACAATCGTTGATTTTATATAATAGTTGTGGAGGTGTGATT > Annotation_U21_Trimmed_contig_9/10527‑10661 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |