New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Annotation_U21_Trimmed_contig_9 1 =0 (0.000)1412 (0.850) 135/256 0.7 100% coding (1/936 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 Plasmid replication initiation protein
?Annotation_U21_Trimmed_contig_9 = 10661 NA (NA)intergenic (+719/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– ORF9/–

Only 100 of 1412 total aligned reads displayed.

ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Annotation_U21_Trimmed_contig_9/133‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCG  <  Annotation_U21_Trimmed_contig_9/10661‑10528
                                                                                                                                                                                                                                                                           
ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAA                                                                                                                                      <  1:896735/135‑1
 TCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAAT                                                                                                                                     <  1:154989/135‑1
 TCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCACTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCAGTGCTCATAAT                                                                                                                                     <  2:859569/135‑1
   TAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCA                                                                                                                                   <  2:2493556/135‑1
       TGTCTGATCTCCCATATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAAAGGTATTAAGTTCAGGATCATATTTTATAAGATCATTGCTCATAATCACAC                                                                                                                                >  2:346833/1‑134
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGACTTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCTCACCTC                                                                                                                             >  1:2062860/1‑135
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                             <  2:2407975/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                             <  2:665757/135‑1
           TGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCA                                                                                                                           <  1:540459/135‑1
            GATCTCCCTTATCACGCATACGTGAAATAATTGAAAAAAATAGATTCATTTCCATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCA                                                                                                                           >  2:2124502/1‑134
              TCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCAC                                                                                                                          >  2:1598419/1‑133
              TCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCAC                                                                                                                          >  1:501531/1‑133
              TCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCAC                                                                                                                          >  1:1931201/1‑133
               CTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAAC                                                                                                                       <  1:162631/135‑1
               CTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAAC                                                                                                                       >  1:98593/1‑135
               CTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAA                                                                                                                        <  1:763917/134‑1
               CTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAA                                                                                                                        <  2:1511144/134‑1
               CTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAA                                                                                                                        <  1:2165098/134‑1
                    TTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTA                                                                                                                  >  2:1557323/1‑135
                    TTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTA                                                                                                                  >  1:1834591/1‑135
                     TATCACGCATACGAGAAATAATTTAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTAT                                                                                                                 <  2:1314399/135‑1
                      ATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATA                                                                                                                >  1:366036/1‑135
                      ATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATA                                                                                                                >  1:291354/1‑135
                      ATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATA                                                                                                                >  1:2379347/1‑135
                      ATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATA                                                                                                                >  2:1258060/1‑135
                      ATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATA                                                                                                                >  2:1191722/1‑135
                            CATACGAGAAATAATTTAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAAT                                                                                                          <  2:1067997/135‑1
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTTCACAACTATTATATAAAATCAA                                                                                                       >  1:229405/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:1351676/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  2:244637/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:1433870/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:2541008/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  2:1798788/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:1733890/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       <  2:453247/135‑1
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  2:2338552/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCA                                                                                                                                   >  2:2165111/1‑107
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGATCATAATCACACCTCAACAACTATTATATAAAATC                                                                                                         >  1:674260/1‑133
                               ACGAGAAATAATTGAAAAAAATAGAGTCATTTCTATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       <  2:1926885/135‑1
                                  AGAAATAATTGAAAAATATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCTGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTAGTATATAAAATCAACGA                                                                                                    >  2:1982015/1‑135
                                      ATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATT                                                                                                  <  2:907813/133‑1
                                       TAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTT                                                                                               <  1:1074560/135‑1
                                            GAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCA                                                                                          <  1:441254/135‑1
                                            GAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATC                                                                                           >  2:1829001/1‑134
                                                AAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGA                                                                                      <  1:1129258/135‑1
                                                AAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGA                                                                                      <  1:1979982/135‑1
                                                AAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGA                                                                                      <  1:2496631/135‑1
                                                 AAATAGATTCATTTCAAGAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGAT                                                                                     <  1:2341000/135‑1
                                                          CATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCCTTAA                                                                            >  2:791533/1‑135
                                                             TTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAA                                                                         <  2:2374272/135‑1
                                                             TTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAA                                                                         <  1:570647/135‑1
                                                             TTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAA                                                                         <  2:1891371/135‑1
                                                             TTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAA                                                                         <  1:2118959/135‑1
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATA                                                              >  2:873838/1‑135
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATA                                                              >  1:1886849/1‑135
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGAT                                                               <  2:406244/134‑1
                                                                          AATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTTTTTATCAACGATCACCATTAAAAACCTCGTTGATAAA                                                            >  1:1001448/1‑135
                                                                          AATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAGCGATCACCATTAAAAACCTCGTTGATAAA                                                            >  1:1292875/1‑135
                                                                          AATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAA                                                            >  2:2532527/1‑135
                                                                             TTACGTAACGGAATGGTATTCAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAG                                                         <  2:1111973/135‑1
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                          >  2:493683/1‑134
                                                                                    ACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAA                                                   <  2:1467149/134‑1
                                                                                    ACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAA                                                   <  1:818261/134‑1
                                                                                              ATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                         <  1:1047685/134‑1
                                                                                              ATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                         <  1:2227407/134‑1
                                                                                                  AGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGA                                                                                      <  1:1787810/85‑1
                                                                                                     TCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGAC                                 >  2:1369686/1‑135
                                                                                                     TCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGAC                                 >  2:2562160/1‑135
                                                                                                       AGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAA                               >  1:2409582/1‑135
                                                                                                         GATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTCTTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:2027851/1‑134
                                                                                                         GATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:1205076/1‑134
                                                                                                         GATCATATTTTATAAGTTAATTTCTCATAATAACACCTCCACAACTATTATAGAAAATCAACTATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAATACCTCGTTGATAAACAGACAAAA                             <  2:709639/135‑1
                                                                                                         GATCATAGTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:2202258/1‑134
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAATCCTCGTTGATAAACAGACAAt                              >  2:949567/1‑132
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:873506/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:1258237/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:1462723/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:2278094/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:408488/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:1587024/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:1676825/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:1144886/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCAACAACTATGATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAAAAGACAAAAC                            >  2:1710560/1‑135
                                                                                                           TCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCACCGATTGTTTATCAACGATCACCATTAAAAACCTCTTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA                             <  2:1769221/133‑1
                                                                                                           TCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA                             <  2:2022190/133‑1
                                                                                                            CATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACC                           <  1:930360/134‑1
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                     >  2:1424625/1‑135
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                     >  1:719046/1‑135
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                         >  2:605098/1‑115
                                                                                                                   TATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                   <  2:102386/135‑1
                                                                                                                   TATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                   <  1:1506034/135‑1
                                                                                                                   TATAAGGTCATTGCTCATAATCACACCTCCACCACTATTAAATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                   <  2:2224373/135‑1
                                                                                                                    ATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATA                  <  2:1684076/135‑1
                                                                                                                      AAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTT                                            <  2:1642991/107‑1
                                                                                                                      AAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGGTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAA                >  1:2461742/1‑135
                                                                                                                       AGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAAC               <  1:1166624/135‑1
                                                                                                                          TCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCAGTAAAAACCTCGTTGATAAACAGACAAAACCTCGGTGATAAACAGACAAAACCGCGTTGATAAACAGA            >  2:296055/1‑135
                                                                                                                           CATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATCAACAGACACAACCTCGGTGATAAAGAGAC           >  2:2063201/1‑135
                                                                                                                               GCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA       <  2:542740/135‑1
                                                                                                                               GCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA       <  1:621087/135‑1
                                                                                                                                                                                                                                                                           
ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Annotation_U21_Trimmed_contig_9/133‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCG  <  Annotation_U21_Trimmed_contig_9/10661‑10528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.