| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Annotation_U21_Trimmed_contig_13 | 1 = | 0 (0.000) | 162 (0.550) | 49/256 | 1.5 | 58.3% | intergenic (–/‑4) | –/rasttk_feature_creation_tool=tRNAscan‑SE | –/tRNA‑Phe‑GAA |
| ? | Annotation_U21_Trimmed_contig_8 | 48167 = | 232 (0.860) | intergenic (‑22/+1) | rasttk_feature_creation_tool=tRNAscan‑SE/rasttk_feature_creation_tool=tRNAscan‑SE | tRNA‑Phe‑GAA/tRNA‑Asp‑GTC | |||||
Only 100 of 396 total aligned reads displayed.
TTGGTAAAAACAAAACTAAATGTGAACTAAACGTTCACTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAA > Annotation_U21_Trimmed_contig_8/48033‑48300 | ttGGTAAAAACAAAACTAAATGTGAACTAAACGTTCACTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTaacaa > 2:1366170/1‑135 (MQ=255)ttGGTAAAAACAAAACTAAATGTGAACTAAACGTTCACTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTaacaa > 2:1030621/1‑135 (MQ=255) aaaacaaaacTAAATGTGAACTAAACGTTCACTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTcc < 1:887054/135‑1 (MQ=255) ggttttaccactaaactacacccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCt > 2:619930‑M2/127‑134 (MQ=255) ccactaaactacacccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACgaga > 1:1948806‑M2/120‑134 (MQ=255) tAAATGTGAACTAAACGTTCACTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACt > 1:253939/1‑135 (MQ=255) cactaaactacaccctcataataaaggtattaaattgtgaatggagcgggacataatcgaactgcctacacatggagcttcaatccattgctctaccgactgagctaacgagccatttACGGTCCTAACGAGACt > 1:1693985‑M2/119‑135 (MQ=255) cactaaactacacccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACt > 2:490218‑M2/119‑135 (MQ=255) cactaaactacacccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACt > 1:1509411‑M2/119‑135 (MQ=255) actaaactacacccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTc > 2:42460‑M2/118‑135 (MQ=255) ctaaactacacccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCg < 2:1242008‑M2/19‑1 (MQ=255) actacacccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACt > 1:2138292‑M2/113‑135 (MQ=255) ctacacccgcataataaaggtattaaattgtgaatggcgcgggacagaaacgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCAAACGAGACTCGaacac < 1:659997‑M2/24‑3 (MQ=255) aaCTAAACGTTCACTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTc < 1:314521/134‑1 (MQ=255) tAAACGTTCACTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTg > 1:1573263/1‑134 (MQ=255) cccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGAt < 1:2300581‑M2/29‑1 (MQ=255) ccgcataataaaggtcttaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGAt > 2:2141491‑M2/106‑134 (MQ=255) ccgcataataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGAt > 2:1660905‑M2/106‑134 (MQ=255) aataaaggtattaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACACGTGATCTCCTGc > 2:2562989‑M2/100‑135 (MQ=255) cTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGt > 1:1995684/1‑135 (MQ=255) gcgGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcaggc > 1:1273155/1‑135 (MQ=255) gcgGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcagg < 1:283515/134‑1 (MQ=255) gcgGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcagg < 1:2468852/134‑1 (MQ=255) gcgGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcagg < 2:1633880/134‑1 (MQ=255) attaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcagg < 1:409920‑M2/44‑1 (MQ=255) attaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcagg < 2:2123674‑M2/44‑1 (MQ=255) attaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcagg < 1:1035120‑M2/44‑1 (MQ=255) attaaattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcagg < 2:2063820‑M2/44‑1 (MQ=255) gggACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcaggca > 2:2387057/1‑134 (MQ=255) gACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACaggcaggc > 2:1789644/1‑135 (MQ=255) aattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGAcagg < 2:318917‑M2/44‑1 (MQ=255) aattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACaggcaggc > 2:2339894‑M2/87‑135 (MQ=255) aattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACaggcaggc > 1:954514‑M2/87‑135 (MQ=255) aattgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACaggcaggc > 1:1002550‑M2/87‑135 (MQ=255) tgtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTc < 1:490218‑M2/52‑1 (MQ=255) aGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCg > 2:807701/1‑133 (MQ=255) aGAATCGAACTGCCGACACATGGAGCGTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGGACCAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCg > 2:2520563/1‑133 (MQ=255) gtgaatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTcc < 1:2427942‑M2/53‑1 (MQ=255) tCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATATATGTTACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTcc < 2:1517600/132‑1 (MQ=255) tCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTcc < 2:2247763/132‑1 (MQ=255) tCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTcc < 1:618461/132‑1 (MQ=255) tCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTc < 1:1758384/131‑1 (MQ=255) tCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTc < 1:1789748/131‑1 (MQ=255) aatggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTa < 1:1109503‑M2/55‑1 (MQ=255) atggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAAc > 1:1337966‑M2/79‑135 (MQ=255) tggcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAAcc < 1:2186954‑M2/58‑1 (MQ=255) gcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAg < 2:291935‑M2/60‑1 (MQ=255) gcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAg < 1:1080473‑M2/60‑1 (MQ=255) gcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAg < 2:553939‑M2/60‑1 (MQ=255) gcgcgggacagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAg < 2:511641‑M2/60‑1 (MQ=255) cTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAg < 1:375496/134‑1 (MQ=255) tGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCt > 2:1278612/1‑135 (MQ=255) acagaatcgaactgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGAc < 2:1997843‑M2/66‑1 (MQ=255) acacATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAg < 1:1206898/128‑1 (MQ=255) acacATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAg > 2:1206898/1‑128 (MQ=255) acacATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGAcc > 2:835111/1‑135 (MQ=255) tgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttAc > 1:509658‑M2/57‑58 (MQ=255) tgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGaccataa > 1:2363627‑M2/57‑132 (MQ=255) tgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGaccataa > 1:1627972‑M2/57‑132 (MQ=255) tgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGaccataa > 1:1662287‑M2/57‑132 (MQ=255) tgccgacacatggagcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGaccataa > 2:1741307‑M2/57‑132 (MQ=255) ccgacacatggatcttcaatccattgctctaccgactgagctaccgagccatttACGGTCCTAACGAGACTAGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAggaccattttt < 1:1456092‑M2/81‑6 (MQ=255) gCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAAtttt < 2:889758/135‑1 (MQ=255) gCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAAtttt < 2:1904364/135‑1 (MQ=255) ctctACCGACTGAGCTCCCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTCGACCATAGGACCAAAGAAAAAATTTTg > 2:1549000/1‑135 (MQ=255) ctctACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTcc > 1:1830006/1‑98 (MQ=255) ctctACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTcc < 2:1830006/98‑1 (MQ=255) ctctACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTg > 2:1489913/1‑135 (MQ=255) ctctACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTg > 1:33911/1‑135 (MQ=255) tctACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTgg > 1:690938/1‑135 (MQ=255) ctACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGa < 1:596128/135‑1 (MQ=255) ctACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGa < 2:253939/135‑1 (MQ=255) ctACCGACTGAGCTACCGAGCCAAAAAAGATATAAATGTAACACCGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACACGCAGGCGTCCTCACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGa < 2:929565/135‑1 (MQ=255) ctACCGACTGAGCTACAGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGAACAAAGAAAAAATTTTGGa < 1:1286568/135‑1 (MQ=255) tACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGaa > 1:1902750/1‑135 (MQ=255) aCCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAAt < 2:1437701/135‑1 (MQ=255) aCCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAAt < 2:2448783/135‑1 (MQ=255) cGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGa < 2:877596/131‑1 (MQ=255) cGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGa > 1:233590/1‑131 (MQ=255) cGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATgg > 2:755678/1‑135 (MQ=255) cGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATgg > 1:2214297/1‑135 (MQ=255) aCTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTc < 2:2281818/61‑1 (MQ=255) aCTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTc > 1:2281818/1‑61 (MQ=255) aCTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATggag > 2:215876/1‑135 (MQ=255) aCTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATggag > 1:922990/1‑135 (MQ=255) gAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTCGACCATAGGACCAAAGAAAAAATTTTGGAATggagga > 2:1949486/1‑134 (MQ=255) gAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATggagga > 2:1576801/1‑134 (MQ=255) gCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATAc > 2:1041934/1‑135 (MQ=255) gCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATAc > 2:1298974/1‑135 (MQ=255) cGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGc < 2:219150/135‑1 (MQ=255) cGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGc < 2:180518/135‑1 (MQ=255) cGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTACTAACCAGCTAGACAATAGGACCTAAGCAAAAATTTTGGAATGGAGGATACAGGGc < 1:807701/135‑1 (MQ=255) aaaaaaTATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGAAc < 1:745097/135‑1 (MQ=255) aaaaaTATATAAATGTAACAACGGTCCTAACGAGACTCGACCTCGTGATCTCATGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACAAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGa > 2:2022383/1‑132 (MQ=255) aaaaaTATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGa > 1:2435174/1‑132 (MQ=255) aaaaaTATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGa > 2:1129250/1‑132 (MQ=255) aaaaaTATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCAGAGGACCAAAGAAAAAATTTTGGAATGGAGTATACAGGGCTCGa > 2:1077900/1‑132 (MQ=255) aaaaTATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGa > 2:2475841/1‑131 (MQ=255) caacGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTa > 1:140475/1‑135 (MQ=255) acGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTaa > 1:1247443/1‑134 (MQ=255) | TTGGTAAAAACAAAACTAAATGTGAACTAAACGTTCACTATGGCGCGGGACAGAATCGAACTGCCGACACATGGAGCTTCAATCCATTGCTCTACCGACTGAGCTACCGAGCCAAAAAATATATAAATGTAACAACGGTCCTAACGAGACTCGAACTCGTGATCTCCTGCGTGACAGGCAGGCGTCCTAACCAGCTAGACCATAGGACCAAAGAAAAAATTTTGGAATGGAGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAA > Annotation_U21_Trimmed_contig_8/48033‑48300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |