| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Annotation_U21_Trimmed_contig_1 | = 38 | 87 (0.260) | 17 (0.940) +TGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGC |
5/14 | 0.2 | 71.0% | coding (38/567 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein |
| ? | Annotation_U21_Trimmed_contig_1 | 76 = | 167 (0.500) | coding (76/567 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein | |||||
GCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Annotation_U21_Trimmed_contig_1/34‑38‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGCACCATCAAGC > Annotation_U21_Trimmed_contig_1/76‑90 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GCACCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCA < 1:1491609/135‑1GCACCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACC < 1:1869130/134‑1GCACCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGCGCAGTGACATCACAAGCTGCAACTAGCGTAGCACC < 2:1086515/134‑1 ACCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCACTAACAACACAAGCAGCAACAAGCGTACCACCAag > 1:1825894/1‑133 CCTGCAAGCAGTGCAGTAACATCACCAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 1:1868406/133‑2 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagt < 2:2395139/135‑4 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagt < 2:376068/135‑4 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagt < 2:18748/135‑4 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAag > 1:835365/1‑132 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 1:1865543/133‑2 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 2:892941/133‑2 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 1:333761/133‑2 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 1:2438751/133‑2 CCTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 1:2991197/133‑2 CTGCAAGCAGTGCAGTAACATCTCAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagtt < 2:1518151/135‑5 CTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCAC > 1:854616/1‑108 CTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCAC < 2:854616/108‑1 CTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGCGCAGTGACATCACAAGCTGCAACTAGCGTAGCACCAagtt < 1:459744/135‑5 CTGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGGATCAACAGCTGCAAGCTCACTTGCACCATCAAGTAGTGCAGTTACATCACAAGCTGCAACTAGCGAAGCACCcaggt > 2:646848/1‑130 TGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttc > 2:1387478/1‑130 TGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTA < 1:1555596/119‑1 TGCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTA > 2:1555596/1‑119 GCAAGCAGTGCAGTAACCTCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 1:1024836/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 2:2107403/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 2:1219411/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 2:798319/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 2:1016345/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 1:821969/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 1:706119/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 2:177071/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttca < 1:2081167/135‑7 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttc > 1:1600109/1‑129 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa > 1:2263579/1‑129 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 2:2263579/130‑2 GCAAGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGAGCAGTTACATCACAAGCTGCAACTAGCGTAGCACCAagttc > 1:2443477/1‑129 AGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttc > 1:481433/1‑126 AGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttc > 1:82/1‑126 AGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttc > 1:2053797/1‑126 AGCAGTGCAGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagttc > 1:393629/1‑126 AGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 2:74666/119‑2 AGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa > 1:74666/1‑118 AGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGC > 2:739838/1‑102 AGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGC < 1:739838/102‑1 AGTAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACA > 1:1235492/1‑96 AGTAACATCACAAGCTGCAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACA < 2:1235492/96‑1 TAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTA < 2:2206016/110‑1 TAACATCACAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTA > 1:2206016/1‑110 CAAGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGAGCAGTAACATCACAAGCTGCAACTAGCGTAGC > 1:2062110/1‑104 CAAGCTGGAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACAT < 1:1333093/82‑1 CAAGCTGCAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGC < 2:2062110/104‑1 CAAGCTGCAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTA < 2:1148993/102‑1 CAAGCTGAAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACAT > 2:1333093/1‑82 AGCTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa > 1:462847/1‑106 AGCTGCAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAa < 2:462847/107‑2 CTGTAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGCAACTAGCGTAGCACCAagtt < 1:520459/108‑5 tgcAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACAT > 2:2524364/4‑77 tgcAACTAGCGTAGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACAT < 1:2524364/74‑1 AGCACCAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGt > 1:2965919/1‑74 CAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGC > 2:2461682/1‑70 CAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAAGCTGC < 1:2461682/70‑1 CAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAA < 1:2143496/65‑1 CAAGTTCAGCTGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGCAGTAACATCACAA > 2:2143496/1‑65 TGTATCATCAGCTGCAAGCTCAGTTGCACCATCAAGTAGTGC > 1:1334195/1‑42 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Annotation_U21_Trimmed_contig_1/34‑38‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGCACCATCAAGC > Annotation_U21_Trimmed_contig_1/76‑90 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |