New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Annotation_U21_Trimmed_contig_9 1 =0 (0.000)1248 (0.810) 131/256 0.7 100% coding (1/936 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 Plasmid replication initiation protein
?Annotation_U21_Trimmed_contig_9 = 10661 NA (NA)intergenic (+719/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– ORF9/–

Only 100 of 1248 total aligned reads displayed.

ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Annotation_U21_Trimmed_contig_9/133‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCG  <  Annotation_U21_Trimmed_contig_9/10661‑10528
                                                                                                                                                                                                                                                                           
ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAA                                                                                                                                      <  1:425906/135‑1
ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAA                                                                                                                                      <  2:785764/135‑1
 TCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAAT                                                                                                                                     <  2:362855/135‑1
 TCTAACTGTCTGATCTCCCTTATCACGCATAAGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAAT                                                                                                                                     <  1:2327200/135‑1
  CTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAAT                                                                                                                                     >  2:1696223/1‑134
   TAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCA                                                                                                                                   <  2:960631/135‑1
   TAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCA                                                                                                                                   <  2:1451902/135‑1
   TAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCA                                                                                                                                   <  2:2068125/135‑1
      CTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACAC                                                                                                                                <  2:1957492/135‑1
      CTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACAC                                                                                                                                <  1:2277707/135‑1
       TGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACAC                                                                                                                                >  1:2703944/1‑134
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                             <  1:162379/135‑1
         TCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTC                                                                                                                             <  1:2616899/135‑1
           TGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCA                                                                                                                           <  2:916312/135‑1
           TGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCA                                                                                                                           <  1:1169041/135‑1
            GATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCAC                                                                                                                          >  2:1745788/1‑135
                      ATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATA                                                                                                                >  1:1717580/1‑135
                       TCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATAT                                                                                                               <  2:2630939/135‑1
                              TACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATC                                                                                                         <  1:1548959/134‑1
                               ACGAGAAATAATTGAAAAAAATAGTTTCATTTCAATAGGGGTGAATATAAGTAACGGAATTGTATTAAGTTCAGTATCATATTTTATAAGATCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:578010/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATTGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:729904/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       <  2:2720454/135‑1
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:491460/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:2384605/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:209496/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:1475749/1‑135
                               ACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAA                                                                                                       >  1:1738896/1‑135
                                       TAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTT                                                                                               <  2:2860754/135‑1
                                        AATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATAT                                                                                                               >  2:1035560/1‑118
                                          TTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTAT                                                                                            >  2:531179/1‑135
                                            GAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATC                                                                                           >  1:2967894/1‑134
                                            GAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATC                                                                                           >  1:903888/1‑134
                                            GAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATC                                                                                           >  1:2203255/1‑134
                                               AAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAAC                                                                                        <  1:2823861/134‑1
                                               AAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAAC                                                                                        <  1:984261/134‑1
                                                AAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGA                                                                                      <  1:1943356/135‑1
                                                AAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGA                                                                                      <  1:2505983/135‑1
                                                 AAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGAT                                                                                     <  2:1212922/135‑1
                                                  AATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGAT                                                                                     >  2:396088/1‑134
                                                  AATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGAT                                                                                     >  1:2783856/1‑134
                                                  AATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGAT                                                                                     >  2:671032/1‑134
                                                               CAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACC                                                                       <  2:199739/135‑1
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGAT                                                               <  2:589682/134‑1
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGAT                                                               <  2:2193801/134‑1
                                                                        TGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAAC                                                                                        <  1:1672818/109‑1
                                                                          AATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAA                                                            >  1:2466968/1‑135
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                          >  2:1251613/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                          >  1:2037765/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                          >  1:1230292/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                          >  1:616051/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                          >  1:2228037/1‑134
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAAC                                                                                        >  1:334693/1‑104
                                                                             TTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCACCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACA                                                          >  2:2335151/1‑134
                                                                                  TAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAA                                                     >  1:1421731/1‑134
                                                                                  TAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAA                                                     >  2:489124/1‑134
                                                                                   AACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAA                                                                         >  2:1899653/1‑113
                                                                                    ACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAA                                                   <  2:1373862/134‑1
                                                                                     CGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACC                                                 <  1:377065/135‑1
                                                                                     CGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAAATATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACC                                                 <  2:706157/135‑1
                                                                                              ATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                                         <  1:82925/134‑1
                                                                                                  AGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACA                                    >  2:1542967/1‑135
                                                                                                  AGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACA                                    >  1:1998917/1‑135
                                                                                                  AGTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACA                                    >  1:1363021/1‑135
                                                                                                   GTTCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAG                                   <  2:434107/135‑1
                                                                                                     TCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGAC                                 >  2:2241557/1‑135
                                                                                                     TCAGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGAC                                 >  1:2564411/1‑135
                                                                                                     TCAGGATCATATTTAATAAGTTCATTGCTCATAATCACACCTCCACAAGTATTATATAAAATCAACGATTGTTTATCAACGATCAACATTAAAAACAACGTTGAGAAACACACAAAACCACGTATATAAAAAGAC                                 >  2:2282781/1‑135
                                                                                                       AGGATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAA                               >  1:130486/1‑135
                                                                                                         GATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:2502159/1‑134
                                                                                                         GATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:871666/1‑134
                                                                                                         GATCATATTTTATAAGTTCATTGCTCATAATAACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAATCCTCGTTGATAAACAGACAACACCTCGTTGAGAAACAGACAAA                              >  2:315626/1‑134
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:163817/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:1584645/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:2650977/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:1146294/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:749218/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:2461831/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:1805026/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:631189/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  1:2131998/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAA                              >  2:2963167/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAAAAGACAAA                              >  2:2783653/1‑133
                                                                                                          ATCATATTTTATAAGTTCATTGCTCATAATCACACCACCAAAACTATTATATAAAATCAACTATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAATCAGACAAAACCTCGTAGATAAACAGACAAAAC                            >  1:1591526/1‑135
                                                                                                           TCATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA                             <  1:868507/133‑1
                                                                                                            CATATTTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCT                          >  2:1847537/1‑135
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                     >  1:2413402/1‑135
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                     >  1:673721/1‑135
                                                                                                                 TTTATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCACGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTG                     >  2:1115165/1‑135
                                                                                                                  TTATCAGTTCATTGATCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGA                    <  2:2574025/135‑1
                                                                                                                   TATAAGTTCTTTGCTCATAATCACACATCCTAATCTATTATATAATATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCTTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                   <  1:1848940/135‑1
                                                                                                                   TATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                   <  2:2396324/135‑1
                                                                                                                   TATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGAT                   <  1:1047199/135‑1
                                                                                                                    ATAAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATA                  <  2:2144075/135‑1
                                                                                                                      AAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAA                >  1:787497/1‑135
                                                                                                                      AAGTTCATTGCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAA                >  2:838223/1‑135
                                                                                                                               GCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA       <  1:531267/135‑1
                                                                                                                               GCTCATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA       <  1:1791254/135‑1
                                                                                                                               GCTCATAATCACAACTCCACAACTATTATATAAAATCAACGATTGATTCTCATCGATAACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAA       <  1:1003634/135‑1
                                                                                                                                  CATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACC     <  1:2899100/134‑1
                                                                                                                                  CATAATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACC     <  1:1084294/134‑1
                                                                                                                                                                                                                                                                           
ATCTAACTGTCTGATCTCCCTTATCACGCATACGAGAAATAATTGAAAAAAATAGATTCATTTCAATAGGGGTGAATTTACGTAACGGAATGGTATTAAGTTCAGGATCATATTTTATAAGTTCATTGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Annotation_U21_Trimmed_contig_9/133‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCACACCTCCACAACTATTATATAAAATCAACGATTGTTTATCAACGATCACCATTAAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCGTTGATAAACAGACAAAACCTCG  <  Annotation_U21_Trimmed_contig_9/10661‑10528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.