New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Annotation_U21_Trimmed_contig_9	1 =	0 (0.000)	1248 (0.810)	131/256	0.7	100%	coding (1/936 nt)	rasttk_feature_annotation_tool=annotate_proteins_km er_v2	Plasmid replication initiation protein
	?	Annotation_U21_Trimmed_contig_9	= 10661	NA (NA)					intergenic (+719/–)	rasttk_feature_annotation_tool=annotate_proteins_km er_v2/–	ORF9/–

ACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTTAATGGTGATCGTTGATAAACAATCGTTGATTTTATATAATAGTTGTGGAGGTGTGATT  >  Annotation_U21_Trimmed_contig_9/10527‑10661                                                                                                                                       | tcgtggTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTTAATGGTGATCGTTGATAAACAATCGTTGATTTTATAGATTAGTTGTGGAGGTGTGAtt  <  2:1841541/131‑1 (MQ=255) aCGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTTAATGGTGATCGTTGATAAACAATCGTTGATTTTATATAATAGTTGTGGAGGTGTGAtt  >  2:2688241/1‑135 (MQ=255)                                                                                                                                       | ACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTGTCTGTTTATCAACGAGGTTTTTAATGGTGATCGTTGATAAACAATCGTTGATTTTATATAATAGTTGTGGAGGTGTGATT  >  Annotation_U21_Trimmed_contig_9/10527‑10661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.