| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 4,372,651 | Δ54,766 bp | PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type)–[PP_3920 CDS (putative Phage integrase)] | 78 genes PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type), PP_3850 CDS (conserved protein of unknown function), PP_5637 CDS (conserved protein of unknown function), PP_3851 CDS (conserved protein of unknown function), PP_3852 CDS (conserved protein of unknown function with BNR domain), PP_5638 CDS (conserved protein of unknown function), PP_3854 CDS (Lysozyme), PP_5639 CDS (conserved exported protein of unknown function), PP_3855 CDS (conserved protein of unknown function), PP_3856 CDS (conserved protein of unknown function), PP_3857 CDS (conserved protein of unknown function), PP_3858 CDS (putative Tail fiber protein), PP_3859 CDS (conserved protein of unknown function), PP_3860 CDS (Phage FluMu protein gp47), PP_3861 CDS (Phage FluMu protein gp46), PP_3862 CDS (putative Phage assembly protein), PP_3863 CDS (putative Phage tail protein), PP_3864 CDS (putative Phage FluMu DNA circulation protein), PP_3865 CDS (putative Phage tail protein), PP_5640 CDS (conserved protein of unknown function), PP_3866 CDS (conserved protein of unknown function), PP_3867 CDS (putative Phage tail tube protein), PP_3868 CDS (Group II intron‑encoding maturase), PP_3869 CDS (putative Phage sheath protein), PP_3870 CDS (Phage FluMu protein gp38), PP_3871 CDS (conserved protein of unknown function), PP_3873 CDS (conserved protein of unknown function), PP_3874 CDS (conserved protein of unknown function), PP_3875 CDS (conserved protein of unknown function), PP_3876 CDS (conserved protein of unknown function), PP_3877 CDS (conserved protein of unknown function), PP_3878 CDS (putative Phage minor capsid protein C), PP_3879 CDS (Phage portal protein_ HK97 family), PP_3880 CDS (conserved exported protein of unknown function), PP_3881 CDS (putative Phage terminase_ large subunit), PP_3882 CDS (putative Phage terminase_ small subunit), PP_3883 CDS (putative Phage holin), PP_3884 CDS (Phage holin_ lambda family), PP_5641 CDS (conserved protein of unknown function), PP_3886 CDS (conserved protein of unknown function), PP_3887 CDS (conserved protein of unknown function), PP_3888 CDS (conserved protein of unknown function), PP_3889 CDS (putative Phage integrase), PP_3890 CDS (conserved protein of unknown function), ybcO CDS (conserved protein of unknown function), PP_3892 CDS (conserved protein of unknown function), PP_3893 CDS (putative Phage DNA helicase), PP_3894 CDS (putative Phage replication protein O), PP_3895 CDS (putative Regulatory protein Cro), PP_3896 CDS (Transcriptional regulator_ Cro_CI family), PP_3897 CDS (conserved protein of unknown function), PP_3898 CDS (conserved protein of unknown function), PP_5643 CDS (conserved protein of unknown function), PP_5644 CDS (conserved membrane protein of unknown function), PP_3899 CDS (conserved protein of unknown function_ hicB family), PP_3900 CDS (hypothetical protein), PP_3901 CDS (conserved protein of unknown function), PP_3902 CDS (conserved protein of unknown function), PP_3903 CDS (conserved protein of unknown function), PP_3904 CDS (conserved protein of unknown function), PP_3905 CDS (Transcriptional regulator_ LuxR family), PP_3906 CDS (conserved protein of unknown function), PP_3907 CDS (conserved protein of unknown function), PP_3908 CDS (conserved protein of unknown function), PP_3909 CDS (conserved protein of unknown function), PP_3910 CDS (conserved protein of unknown function), PP_3911 CDS (conserved protein of unknown function), PP_3912 CDS (DNA‑cytosine methyltransferase), PP_3913 CDS (protein of unknown function), PP_5645 CDS (conserved protein of unknown function), PP_3914 CDS (conserved protein of unknown function), PP_5646 CDS (protein of unknown function), PP_3915 CDS (conserved protein of unknown function), PP_3916 CDS (conserved protein of unknown function), PP_5647 CDS (conserved protein of unknown function), PP_3917 CDS (conserved protein of unknown function), PP_3919 CDS (conserved protein of unknown function), [PP_3920 CDS (putative Phage integrase)] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 4372651 | 4427416 | 54766 | 905 [0] | [1] 981 | PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type)–[PP_3920 CDS (putative Phage integrase)] | PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type),PP_3850 CDS (conserved protein of unknown function),PP_5637 CDS (conserved protein of unknown function),PP_3851 CDS (conserved protein of unknown function),PP_3852 CDS (conserved protein of unknown function with BNR domain),PP_5638 CDS (conserved protein of unknown function),PP_3854 CDS (Lysozyme),PP_5639 CDS (conserved exported protein of unknown function),PP_3855 CDS (conserved protein of unknown function),PP_3856 CDS (conserved protein of unknown function),PP_3857 CDS (conserved protein of unknown function),PP_3858 CDS (putative Tail fiber protein),PP_3859 CDS (conserved protein of unknown function),PP_3860 CDS (Phage FluMu protein gp47),PP_3861 CDS (Phage FluMu protein gp46),PP_3862 CDS (putative Phage assembly protein),PP_3863 CDS (putative Phage tail protein),PP_3864 CDS (putative Phage FluMu DNA circulation protein),PP_3865 CDS (putative Phage tail protein),PP_5640 CDS (conserved protein of unknown function),PP_3866 CDS (conserved protein of unknown function),PP_3867 CDS (putative Phage tail tube protein),PP_3868 CDS (Group II intron‑encoding maturase),PP_3869 CDS (putative Phage sheath protein),PP_3870 CDS (Phage FluMu protein gp38),PP_3871 CDS (conserved protein of unknown function),PP_3873 CDS (conserved protein of unknown function),PP_3874 CDS (conserved protein of unknown function),PP_3875 CDS (conserved protein of unknown function),PP_3876 CDS (conserved protein of unknown function),PP_3877 CDS (conserved protein of unknown function),PP_3878 CDS (putative Phage minor capsid protein C),PP_3879 CDS (Phage portal protein_ HK97 family),PP_3880 CDS (conserved exported protein of unknown function),PP_3881 CDS (putative Phage terminase_ large subunit),PP_3882 CDS (putative Phage terminase_ small subunit),PP_3883 CDS (putative Phage holin),PP_3884 CDS (Phage holin_ lambda family),PP_5641 CDS (conserved protein of unknown function),PP_3886 CDS (conserved protein of unknown function),PP_3887 CDS (conserved protein of unknown function),PP_3888 CDS (conserved protein of unknown function),PP_3889 CDS (putative Phage integrase),PP_3890 CDS (conserved protein of unknown function),ybcO CDS (conserved protein of unknown function),PP_3892 CDS (conserved protein of unknown function),PP_3893 CDS (putative Phage DNA helicase),PP_3894 CDS (putative Phage replication protein O),PP_3895 CDS (putative Regulatory protein Cro),PP_3896 CDS (Transcriptional regulator_ Cro_CI family),PP_3897 CDS (conserved protein of unknown function),PP_3898 CDS (conserved protein of unknown function),PP_5643 CDS (conserved protein of unknown function),PP_5644 CDS (conserved membrane protein of unknown function),PP_3899 CDS (conserved protein of unknown function_ hicB family),PP_3900 CDS (hypothetical protein),PP_3901 CDS (conserved protein of unknown function),PP_3902 CDS (conserved protein of unknown function),PP_3903 CDS (conserved protein of unknown function),PP_3904 CDS (conserved protein of unknown function),PP_3905 CDS (Transcriptional regulator_ LuxR family),PP_3906 CDS (conserved protein of unknown function),PP_3907 CDS (conserved protein of unknown function),PP_3908 CDS (conserved protein of unknown function),PP_3909 CDS (conserved protein of unknown function),PP_3910 CDS (conserved protein of unknown function),PP_3911 CDS (conserved protein of unknown function),PP_3912 CDS (DNA‑cytosine methyltransferase),PP_3913 CDS (protein of unknown function),PP_5645 CDS (conserved protein of unknown function),PP_3914 CDS (conserved protein of unknown function),PP_5646 CDS (protein of unknown function),PP_3915 CDS (conserved protein of unknown function),PP_3916 CDS (conserved protein of unknown function),PP_5647 CDS (conserved protein of unknown function),PP_3917 CDS (conserved protein of unknown function),PP_3919 CDS (conserved protein of unknown function),[PP_3920 CDS (putative Phage integrase)] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 4372650 | 0 (0.000) | 860 (1.030) | 121/264 | 0.3 | 100% | intergenic (‑1235/‑337) | PP_5636 CDS (protein of unknown function)/PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type) | –/– |
| ? | AE015451_phaM1 | 4427417 = | 0 (0.000) | intergenic (+1/+101) | PP_3920 CDS (putative Phage integrase)/PP_t61 tRNA (tRNA‑Cys) | –/– | |||||
Only 100 of 922 total aligned reads displayed.
CTAACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/4372512‑4372650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaTGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACG > AE015451_phaM1/4427417‑4427552 TAACAATGCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAGTAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAGTTTGGCTTACTCATATACGCTG < 2:14205010/137‑1 AACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA < 2:2244295/137‑1 AACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA < 1:5329525/137‑1 AACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATGTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA < 2:12563754/137‑1 TTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAG < 1:2183049/137‑1 TTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAG > 2:13575118/1‑137 CGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGG < 1:7436354/137‑1 CGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGG < 2:11640213/137‑1 CGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGG < 1:4958327/137‑1 ATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGA > 1:17938799/1‑137 AGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACT < 1:1377988/137‑1 GTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTG > 2:1023288/1‑137 CTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCA > 1:13040997/1‑137 CTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCA > 1:12127959/1‑137 TTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAA > 2:1486786/1‑137 GTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAG > 1:11003815/1‑137 TCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGT > 2:16870157/1‑137 CAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTT > 2:917118/1‑137 AGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTT > 2:8513155/1‑137 GGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGA < 1:1562942/137‑1 GGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGAC > 2:2394717/1‑137 GCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACT < 2:4016180/137‑1 TACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTT > 2:1077514/1‑137 ATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCC > 2:10971711/1‑137 ATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCC > 1:11270144/1‑137 GACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGC < 1:3161018/137‑1 CGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGC > 2:4208662/1‑137 CGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGC > 1:9686464/1‑137 GGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCG > 2:17341042/1‑137 GGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCG > 2:18955751/1‑137 GGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCG > 2:12970246/1‑137 GGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCG > 1:14070321/1‑137 GGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCG > 2:5276411/1‑137 GGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCG > 1:5877164/1‑137 GCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGC > 2:6939001/1‑137 CAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAA > 2:14662305/1‑137 AAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAA > 2:6104856/1‑137 AAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAA > 2:7454590/1‑137 AAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAA > 1:16597425/1‑137 AAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAA > 1:17193236/1‑137 AGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAG > 1:12905284/1‑137 GCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGTGCGCAAAGA > 1:6238269/1‑137 CACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAA > 2:8255180/1‑137 CACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAA > 1:8167010/1‑137 ACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCC > 1:10105972/1‑137 ACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCC < 1:16081143/137‑1 CGATTTATCTGGCATCACGAACATCGTAGTGCCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGATCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCC > 2:17866860/1‑137 CGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCC > 2:16251690/1‑137 GATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGNCAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCG > 1:18283025/1‑137 GATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCG > 2:3733498/1‑137 GATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCG > 1:8964471/1‑137 GATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAAACCCG > 1:7205452/1‑137 ATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACC > 1:15211667/1‑137 ATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTNTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACC > 1:16368822/1‑137 CTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTC < 2:13215344/137‑1 CAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCT < 2:5452264/137‑1 CAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCT < 1:6805251/137‑1 CAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCT < 2:15547646/137‑1 CAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCT < 1:17542834/137‑1 CAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCT < 1:18483828/137‑1 CAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCT < 1:241894/137‑1 AAGAACATCGTAGTGTCATTTGAAAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCAGCAACCTCAATGGCTG > 2:7883055/1‑137 GAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCG < 1:16992538/137‑1 GAACATCGTACTGTCATTTGACAGAAGTCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAATTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCG < 2:345863/137‑1 CATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGG < 1:9406618/137‑1 CGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTT > 2:5834543/1‑137 CGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTT > 1:10415292/1‑137 CGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTT > 2:2968716/1‑137 CGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTT > 1:11555600/1‑137 CGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTAACTGGCTGCGGGGCTT > 2:8780860/1‑137 TAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTC < 2:11999493/137‑1 AGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCG > 2:1506315/1‑137 TGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAA > 1:861049/1‑137 TGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAA > 1:16736154/1‑137 TGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAA > 1:3333445/1‑137 GTCATTTGACAGAAGTCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGTTTTtcttt < 1:1873542/137‑6 TCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATG < 2:6542950/137‑1 CATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGG > 2:7294787/1‑137 TTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTG > 1:14472614/1‑137 GACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAG > 1:5523848/1‑137 GACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCGGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAG < 1:799242/137‑1 GACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTCGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAG > 2:2855924/1‑137 AAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGA < 1:4161019/137‑1 ATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGG > 1:12294495/1‑137 GGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGG < 1:13386899/137‑1 TACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATC < 1:7727895/137‑1 TACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATC < 2:18497686/137‑1 TACTCATATACACTGATGAAGTTTCGGGACTGGTCTCAATTAGTTTTTGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATC < 2:11320300/137‑1 TCATATACACTGATGAAGTTTTGGGACTGGTCTAAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAA > 2:4506843/1‑137 ATATACACTGATGAAGTTTTGGGACTGGTCTCAATTCGTTTTGGGAATTCGGTGTTTTCCTGCGCGCAAAGAAACACCCCGCCACCTCAATGGCTGCGGGGTTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACC > 1:7006436/1‑137 CACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGT > 1:9968835/1‑137 CACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGT > 2:13861854/1‑137 CACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTCCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGATTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGT > 2:15734224/1‑137 TGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGA > 2:4844798/1‑137 GATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGTGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGAC > 2:9560255/1‑137 GATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGAC > 1:4442210/1‑137 GATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGAC > 1:3814194/1‑137 GATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAAACCCGCAACCTCAATGGCTGCGGGTCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGAC > 2:18102852/1‑137 ATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACG > 2:16511493/1‑137 ATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACG > 1:14847926/1‑137 CTAACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/4372512‑4372650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaTGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACG > AE015451_phaM1/4427417‑4427552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |