Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AE015451_phaM1 4,372,651 Δ54,766 bp PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type)[PP_3920 CDS (putative Phage integrase)] 78 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AE015451_phaM1 4372651 4427416 54766 905 [0] [1] 981 PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type)–[PP_3920 CDS (putative Phage integrase)] PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type),PP_3850 CDS (conserved protein of unknown function),PP_5637 CDS (conserved protein of unknown function),PP_3851 CDS (conserved protein of unknown function),PP_3852 CDS (conserved protein of unknown function with BNR domain),PP_5638 CDS (conserved protein of unknown function),PP_3854 CDS (Lysozyme),PP_5639 CDS (conserved exported protein of unknown function),PP_3855 CDS (conserved protein of unknown function),PP_3856 CDS (conserved protein of unknown function),PP_3857 CDS (conserved protein of unknown function),PP_3858 CDS (putative Tail fiber protein),PP_3859 CDS (conserved protein of unknown function),PP_3860 CDS (Phage FluMu protein gp47),PP_3861 CDS (Phage FluMu protein gp46),PP_3862 CDS (putative Phage assembly protein),PP_3863 CDS (putative Phage tail protein),PP_3864 CDS (putative Phage FluMu DNA circulation protein),PP_3865 CDS (putative Phage tail protein),PP_5640 CDS (conserved protein of unknown function),PP_3866 CDS (conserved protein of unknown function),PP_3867 CDS (putative Phage tail tube protein),PP_3868 CDS (Group II intron‑encoding maturase),PP_3869 CDS (putative Phage sheath protein),PP_3870 CDS (Phage FluMu protein gp38),PP_3871 CDS (conserved protein of unknown function),PP_3873 CDS (conserved protein of unknown function),PP_3874 CDS (conserved protein of unknown function),PP_3875 CDS (conserved protein of unknown function),PP_3876 CDS (conserved protein of unknown function),PP_3877 CDS (conserved protein of unknown function),PP_3878 CDS (putative Phage minor capsid protein C),PP_3879 CDS (Phage portal protein_ HK97 family),PP_3880 CDS (conserved exported protein of unknown function),PP_3881 CDS (putative Phage terminase_ large subunit),PP_3882 CDS (putative Phage terminase_ small subunit),PP_3883 CDS (putative Phage holin),PP_3884 CDS (Phage holin_ lambda family),PP_5641 CDS (conserved protein of unknown function),PP_3886 CDS (conserved protein of unknown function),PP_3887 CDS (conserved protein of unknown function),PP_3888 CDS (conserved protein of unknown function),PP_3889 CDS (putative Phage integrase),PP_3890 CDS (conserved protein of unknown function),ybcO CDS (conserved protein of unknown function),PP_3892 CDS (conserved protein of unknown function),PP_3893 CDS (putative Phage DNA helicase),PP_3894 CDS (putative Phage replication protein O),PP_3895 CDS (putative Regulatory protein Cro),PP_3896 CDS (Transcriptional regulator_ Cro_CI family),PP_3897 CDS (conserved protein of unknown function),PP_3898 CDS (conserved protein of unknown function),PP_5643 CDS (conserved protein of unknown function),PP_5644 CDS (conserved membrane protein of unknown function),PP_3899 CDS (conserved protein of unknown function_ hicB family),PP_3900 CDS (hypothetical protein),PP_3901 CDS (conserved protein of unknown function),PP_3902 CDS (conserved protein of unknown function),PP_3903 CDS (conserved protein of unknown function),PP_3904 CDS (conserved protein of unknown function),PP_3905 CDS (Transcriptional regulator_ LuxR family),PP_3906 CDS (conserved protein of unknown function),PP_3907 CDS (conserved protein of unknown function),PP_3908 CDS (conserved protein of unknown function),PP_3909 CDS (conserved protein of unknown function),PP_3910 CDS (conserved protein of unknown function),PP_3911 CDS (conserved protein of unknown function),PP_3912 CDS (DNA‑cytosine methyltransferase),PP_3913 CDS (protein of unknown function),PP_5645 CDS (conserved protein of unknown function),PP_3914 CDS (conserved protein of unknown function),PP_5646 CDS (protein of unknown function),PP_3915 CDS (conserved protein of unknown function),PP_3916 CDS (conserved protein of unknown function),PP_5647 CDS (conserved protein of unknown function),PP_3917 CDS (conserved protein of unknown function),PP_3919 CDS (conserved protein of unknown function),[PP_3920 CDS (putative Phage integrase)]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451_phaM1 = 43726500 (0.000)860 (1.030) 121/264 0.3 100% intergenic (‑1235/‑337) PP_5636 CDS (protein of unknown function)/PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type) –/–
?AE015451_phaM1 4427417 = 0 (0.000)intergenic (+1/+101) PP_3920 CDS (putative Phage integrase)/PP_t61 tRNA (tRNA‑Cys) –/–