| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 3,556,355 | Δ14,665 bp | [PP_3140 CDS (Glycosyl transferase_ group 2 family protein)]–[yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type)] | [PP_3140 CDS (Glycosyl transferase_ group 2 family protein)], PP_3141 CDS (Glycosyl transferase_ WecB_TagA_CpsF family), PP_3142 CDS (putative Sugar transferase), PP_3143 CDS (Transcriptional regulator_ LysR family), tdcG‑III CDS (L‑serine dehydratase), PP_3145 CDS (conserved protein of unknown function), PP_3146 CDS (putative Oxidoreductase), potF‑II CDS (putrescine‑binding periplasmic protein), PP_3148 CDS (putative Glutamine synthetase), PP_3149 CDS (Transcriptional regulator_ AraC family), PP_3150 CDS (conserved protein of unknown function), sad‑II CDS (NAD+‑dependent succinate semialdehyde dehydrogenase), [yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type)] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 3556355 | 3571019 | 14665 | 683 [0] | [0] 692 | [PP_3140 CDS (Glycosyl transferase_ group 2 family protein)]–[yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type)] | [PP_3140 CDS (Glycosyl transferase_ group 2 family protein)],PP_3141 CDS (Glycosyl transferase_ WecB_TagA_CpsF family),PP_3142 CDS (putative Sugar transferase),PP_3143 CDS (Transcriptional regulator_ LysR family),tdcG‑III CDS (L‑serine dehydratase),PP_3145 CDS (conserved protein of unknown function),PP_3146 CDS (putative Oxidoreductase),potF‑II CDS (putrescine‑binding periplasmic protein),PP_3148 CDS (putative Glutamine synthetase),PP_3149 CDS (Transcriptional regulator_ AraC family),PP_3150 CDS (conserved protein of unknown function),sad‑II CDS (NAD+‑dependent succinate semialdehyde dehydrogenase),[yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type)] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 3556354 | 0 (0.000) | 646 (0.800) | 121/254 | 0.2 | 100% | coding (771/1188 nt) | PP_3140 CDS (Glycosyl transferase_ group 2 family protein) | |
| ? | AE015451_phaM1 | 3571020 = | 0 (0.000) | coding (49/867 nt) | yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type) | ||||||