Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AE015451_phaM1 3,760,510 Δ22,673 bp PP_3325 CDS (putative Outer membrane ferric siderophore receptor)–[nikD CDS (nickel ABC transporter ATP‑binding subunit)] 22 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AE015451_phaM1 3760510 3783182 22673 923 [0] [0] 906 PP_3325 CDS (putative Outer membrane ferric siderophore receptor)–[nikD CDS (nickel ABC transporter ATP‑binding subunit)] PP_3325 CDS (putative Outer membrane ferric siderophore receptor),PP_3326 CDS (conserved exported protein of unknown function),PP_3328 CDS (putative Ring‑cleaving dioxygenase),PP_5599 CDS (putative transcriptional regulator_ LysR family),PP_3329 CDS (conserved membrane protein of unknown function),PP_5600 CDS (conserved protein of unknown function),PP_3330 CDS (putative Outer membrane ferric siderophore receptor),PP_3331 CDS (conserved membrane protein of unknown function),PP_3332 CDS (putative cytochrome c‑type protein),PP_3333 CDS (conserved protein of unknown function),PP_5743 CDS (putative TonB‑dependent receptor protein),PP_3335 CDS (conserved protein of unknown function),PP_3336 CDS (conserved protein of unknown function),PP_3337 CDS (conserved membrane protein of unknown function),PP_3338 CDS (putative cytochrome bd‑type quinol oxidase),PP_3339 CDS (conserved exported protein of unknown function),PP_3340 CDS (putative TonB‑dependent receptor),nikR CDS (nickel‑responsive regulator),nikA CDS (nickel ABC transporter periplasmic binding protein),nikB CDS (nickel ABC transporter permease subunit),nikC CDS (nickel ABC transporter permease subunit),[nikD CDS (nickel ABC transporter ATP‑binding subunit)]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451_phaM1 = 37605090 (0.000)904 (1.060) 134/270 0.1 100% intergenic (+167/‑144) folEB CDS (GTP cyclohydrolase I)/PP_3325 CDS (putative Outer membrane ferric siderophore receptor) –/–
?AE015451_phaM1 3783183 = 0 (0.000)coding (274/771 nt) nikD CDS (nickel ABC transporter ATP‑binding subunit)