mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 628,798 | 0 | T | G | 53.3% | 4.2 / 15.3 | 15 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NC_012967 | 580,479 | 0 | T | G | 41.4% | 32.5 / 12.6 | 29 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NC_012967 | 1,645,262 | 0 | G | A | 32.6% | 64.8 / 28.8 | 43 | R166R (CGC→CGT) | mlc | DNA‑binding transcriptional repressor Mlc |
| * | NC_012967 | 349,626 | 0 | C | T | 31.5% | 132.3 / 76.7 | 92 | P167S (CCG→TCG) | yaiL | DUF2058 domain‑containing protein |
| * | NC_012967 | 1,016,282 | 0 | A | T | 30.1% | 121.9 / 78.4 | 83 | *234Y (TAA→TAT) | elfD | molecular chaperone |
| * | NC_012967 | 4,224,255 | 0 | C | G | 26.7% | 156.6 / 50.9 | 75 | W366S (TGG→TCG) | malE | maltose/maltodextrin ABC transporter substrate‑binding protein MalE |
| * | NC_012967 | 4,442,806 | 0 | T | A | 26.5% | 69.2 / 22.9 | 34 | F21Y (TTT→TAT) | cybC | cytochrome b562 |
| * | NC_012967 | 4,125,953 | 0 | A | G | 24.4% | 68.0 / 25.9 | 45 | T618A (ACC→GCC) | pflD | formate C‑acetyltransferase |
| * | NC_012967 | 3,214,571 | 0 | A | T | 24.2% | 68.3 / 17.6 | 33 | E58D (GAA→GAT) | agaE | PTS N‑acetylgalactosamine transporter subunit IID |
| * | NC_012967 | 517,512 | 0 | A | C | 22.9% | 70.5 / 16.7 | 35 | S340A (TCA→GCA) | allD | ureidoglycolate dehydrogenase |
| * | NC_012967 | 469,605 | 0 | G | T | 21.1% | 192.1 / 20.9 | 76 | G122C (GGC→TGC) | adk | adenylate kinase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 1869799 = | 73 (1.450) | 9 (0.200) | 6/144 | 2.9 | 13.4% | coding (47/696 nt) | tsaB | tRNA (adenosine(37)‑N6)‑threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB |
| ? | NC_012967 | 1869822 = | 51 (1.140) | coding (24/696 nt) | tsaB | tRNA (adenosine(37)‑N6)‑threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | |||||
| * | ? | NC_012967 | = 4142376 | 64 (1.270) | 7 (0.150) | 6/150 | 3.0 | 10.4% | coding (756/1101 nt) | trmA | tRNA (uridine(54)‑C5)‑methyltransferase TrmA |
| ? | NC_012967 | = 4142387 | 61 (1.310) | coding (745/1101 nt) | trmA | tRNA (uridine(54)‑C5)‑methyltransferase TrmA | |||||