New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1737987 =	20 (0.890)	4 (0.200)	3/282	2.4	21.7%	coding (32/348 nt)	yffB	putative glutathione‑dependent thiol reductase
	?	AE015451	= 1777401	11 (0.550)					intergenic (+135/+157)	PP_5476/PP_1585	conserved protein of unknown function/putative Antidote protein

ATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1738222‑1737987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggcatcaaagcctgGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCC  <  AE015451/1777401‑1777173                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG                                                                                                                                                                                                                                       >  2:247283/1‑236                               ATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATC                                                                                                                                                                                                                                               <  2:136856/198‑1                                                                                                             GTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCG                                                                                                                                                                           >  2:49449/1‑188                                                                                                                                               CGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTGTTTTGTTCGTTTCGACCCCAATAGAAT                                                                                                                               <  1:49449/198‑1                                                                                                                                                          TGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG                                                                                                                                                                                                                                       <  1:176663/83‑1                                                                                                                                                                                                 CCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAAT                                                                                                                               <  2:181721/148‑1                                                                                                                                                                                                 CCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAAT                                                                                                                               >  1:181722/1‑148                                                                                                                                                                                                                           cgACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTT                                                                                              <  2:89930/153‑1                                                                                                                                                                                                                             ACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACT          <  1:337020/237‑1                                                                                                                                                                                                                             ACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAAC           >  1:380703/1‑236                                                                                                                                                                                                                             ACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAAT                                                                                                                                                                                                   <  1:238120/52‑1                                                                                                                                                                                                                             ACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAAT                                                                                                                                                                                                   >  2:238119/1‑52                                                                                                                                                                                                                               GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCTAATAGAATCAGGTGTTTACGGAT                                                                                                                >  2:54057/1‑133                                                                                                                                                                                                                                     AAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTTGGGAAGATTTACG                                                                                           >  1:159349/1‑148                                                                                                                                                                                                                                     AAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCC  <  1:202688/237‑1                                                                                                                                                                                                                                       AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTT                                                                                                         >  2:191206/1‑132                                                                                                                                                                                                                                       AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCC‑TTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGAT                                     >  1:65199/1‑199                                                                                                                                                                                                                                         CCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGACTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCC                                                >  2:308317/1‑187                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1738222‑1737987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggcatcaaagcctgGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCC  <  AE015451/1777401‑1777173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.