New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1737987 =	20 (0.890)	4 (0.200)	3/282	2.4	21.7%	coding (32/348 nt)	yffB	putative glutathione‑dependent thiol reductase
	?	AE015451	= 1777401	11 (0.550)					intergenic (+135/+157)	PP_5476/PP_1585	conserved protein of unknown function/putative Antidote protein

TCATCGACGGCTGGGCCAGCATCAGCTCGACGGCCTTGGCCTGGTCGAGGTCTGCCTTGCTGGCGTCGTCCAGCTTGCGGAAGGTGGTGCCGGCACGGTTGAGGATGACTTCCCAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATCCACTCAGCGCCACGGCTGTCACGGTATAGATCGGTCATCTTGGCCGAACGGTGACCCAGCAGTCGCTGTGCATCTCGACCTTCTTCGTCATGTAGCCTGGCCGCCAGGGACCGCTGCTCAT  >  AE015451/1737751‑1738222                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                            tcatcGACGGCTGGGCCAGCATCAGCTCGACGGCCTTGGCCTGGTCGAGGTCTGCCTTGCTGGCGTCGTCCAGCTTGCGGAAGGTGGTGCCGGCACGGTTGAGGATGACTTCCCAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTcac                                                                                                                                                                                                                                             <  1:322263/237‑1 (MQ=255)     cGACGGCTGGGCCAGCATCAGCTCGACGGCCTTGGCCTGGTCGAGGTCTGCCTTGCTGGCGTCGTCCAGCTTGCGGAAGGTGGTGCCGGCACGGTTGAGGATGACTTCCCAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAggg                                                                                                                                                                                                                                         >  2:291694/1‑236 (MQ=255)      gACGGCTGGGCCAGCATCAGCTCGACGGCCTTGGCCTGGTCGAGGTCTGCCTTGCTGGCGTCGTCCAGCTTGCGGAAGGTGGTGCCGGCACGGTTGAGGATGACTTCCCAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCt                                                                                                                                                                                                                                        <  1:329808/237‑1 (MQ=255)        ggatctcgagttgtttcggtttgagaatttttcagatcaagatcacggacggatcttggtcggcagaacgcctgggaaggatatcgttgcgtaaatcttccccaaaatgcatccgtaaacacctgattctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCttt                                                                                                                                                                                                                                      <  1:202688‑M1/8‑1 (MQ=255)                agttgtttcggtttgagaatttttcagatcaagatcacggacggatcttggtcggcagaacgcctgggaaggatatcgttgcgtaaatcttccccaaaatgcatccgtaaacacctgattctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCCGt                                                                                                                                                                                                                              <  1:337020‑M1/16‑1 (MQ=255)                 gttgtttcggtttgagaatttttcagatcaagatcacggacggatcttggtcggcagaacgcctgggaaggatatcgttgcgtaaatcttccccaaaatgcatccgtaaacacctgattctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCCGt                                                                                                                                                                                                                              >  1:380703‑M1/221‑236 (MQ=255)                 cAGCATCAGCTCGACGGCCTTGGCCTGGTCGAGGTCTGCCTTGCTGGCGTCGTCCAGCTTGCGGAAGGTGGTGCCGGCACGGTTGAGGATGACTTCCCAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTa                                                                                                                                                                                                                             >  1:247285/1‑237 (MQ=255)                                            atcaagatcacggacggatcttggtcggcagaacgcctgggaaggatatcgttgcgtaaatcttccccaaaatgcatccgtaaacacctgattctattggggtcgaaacgaacaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCt                                                                                                                                                                                                                                        >  1:65199‑M1/194‑199 (MQ=255)                                               gAGGTCTGCCTTGCTGGCGTCGTCCAGCTTGCGGAAGGTGGTGCCGGCACGGTTGAGGATGACTTCCCAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAgggg                                                                                                                                                                                                >  1:422271/1‑236 (MQ=255)                                                      ggacggatcttggtcggcagaacgcctgggaaggatatcgttgcgtaaatcttccccaaaatgcatccgtaaacacctgattctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaagtcattgatttaactgggctttagtcggtttaacttggcgtccCAgg                                                                                                                                                                                                                                          >  2:308317‑M1/184‑187 (MQ=255)                                                                                                 cgtaaatcttcccaaaaatgcatccgtaaacacctgattctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCttt                                                                                                                                                                                                                                      >  1:159349‑M1/141‑148 (MQ=255)                                                                                                    aaatcttccccaaaatgcatccgtaaacacctgattctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCcgtcg                                                                                                                                                                                                                            <  2:89930‑M1/18‑3 (MQ=255)                                                                                                               aaaatgcatccgtaaacacctgattctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCt                                                                                                                                                                                                                                        >  2:191206‑M1/127‑132 (MQ=255)                                                                                                                cccAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCt                                                                                                                                                                                                                                        >  1:309687/1‑131 (MQ=255)                                                                                                                cccAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCt                                                                                                                                                                                                                                        <  2:309685/131‑1 (MQ=255)                                                                                                                cccAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATg                                                                                                                                      >  2:393813/1‑229 (MQ=255)                                                                                                                      atccgtaaacacctgattctattagggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGcc                                                                                                                                                                                                                                >  2:54057‑M1/120‑133 (MQ=255)                                                                                                                                     attctattggggtcgaaacgaacaaaacaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCg                                                                                                                                                <  1:49449‑M1/94‑1 (MQ=255)                                                                                                                                     attctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAgg                                                                                                                                                                                                  <  2:181721‑M1/44‑1 (MQ=255)                                                                                                                                     attctattggggtcgaaacgaacaaaaaaggcgcaattccgatgcgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAgg                                                                                                                                                                                                  >  1:181722‑M1/105‑148 (MQ=255)                                                                                                                                       cGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCaa                                                                                                                                                                    <  1:110520/176‑1 (MQ=255)                                                                                                                                                     aCGGGCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGGACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGGGTAAGTCATTGAATTTAAAgg                                                                                                                                                                                                  <  2:262612/132‑1 (MQ=255)                                                                                                                                                       ggTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAACTTAGTCGCAGGATTATGCGACATCGATCCACTCa                                                                                                                     >  1:366002/1‑207 (MQ=255)                                                                                                                                                                                 cgccatatttgctttaaggcattgatttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATCCACTCAGCGCCAc                                                                                                              >  2:49449‑M1/61‑188 (MQ=255)                                                                                                                                                                                                   gCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATcc                                                                                                                          >  1:94028/1‑158 (MQ=255)                                                                                                                                                                                                   gCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATcc                                                                                                                          <  2:94027/158‑1 (MQ=255)                                                                                                                                                                                                     tntGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATCCACTCAGCGCCACGGCTg                                                                                                         <  2:21162/173‑1 (MQ=255)                                                                                                                                                                                                      ttGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATCCACTCAGCGCCACGGCTGTCACGGTATAGATCGGTCATCTTGGCCGAACGGTGACCCAGCAGTCGCTGTGCATCTCGACcttc                                        <  1:291696/237‑1 (MQ=255)                                                                                                                                                                                                        gTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCt                                                                                                                                                                                                                                        <  2:216344/43‑1 (MQ=255)                                                                                                                                                                                                        gTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATc                                                                                                                               <  2:179426/148‑1 (MQ=255)                                                                                                                                                                                                         atttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCCGt                                                                                                                                                                                                                              >  2:238119‑M1/37‑52 (MQ=255)                                                                                                                                                                                                         atttaactgggctttagtcggtttaacttggcgtccCAGGCTTTGATGCCGt                                                                                                                                                                                                                              <  1:238120‑M1/16‑1 (MQ=255)                                                                                                                                                                                                                  cAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCGCCCAAAAATTAGTCGCAGGATTATGCGACATCGATCCACTCAGCGCCACGGCTGTCACGGTATAGATCGGTCATCTTGGCCGAACGGTGACCCAGCAGTCGCTGTGCATCTCGACCTTCTTCGTCATGTAg                            <  1:397725/237‑1 (MQ=255)                                                                                                                                                                                                                      tACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAag                                                                                                                                                                                                                          >  1:216345/1‑43 (MQ=255)                                                                                                                                                                                                                                 ttCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATCCACTCAGCGCCACGGCTGTCACGGTATAGATCGGTCATCTTGGCCGAACGGTGACCCAGCAGTCGCTGTGCATCTCGACCTTCTTCGTCATGTAGCCTGGCCGCCAGGGa             <  1:328309/237‑1 (MQ=255)                                                                                                                                                                                                                                             CAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCa                                                                                                                                                           <  1:176663‑M1/83‑1 (MQ=255)                                                                                                                                                                                                                                             CAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATCCACTCAGCGCCACGGCTGTCACGGTATAGATCGGTCATCTTGGCCGAACGGTGACCCAGCAGTCGCTGTGCATCTCGACCTTCTTCGTCATGTAGCCTGGCCGCCAGGGACCGCTGCTCAt  >  2:247283‑M1/1‑236 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                            TCATCGACGGCTGGGCCAGCATCAGCTCGACGGCCTTGGCCTGGTCGAGGTCTGCCTTGCTGGCGTCGTCCAGCTTGCGGAAGGTGGTGCCGGCACGGTTGAGGATGACTTCCCAGCCGTGTTCGTCGCACCAGCGGTTCAGGCTGTCACGGTCGATGCCTTGGGTTTTGTAATCATGGAATTCGTAGGCGATGGCTTTGTCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGATTATGCGACATCGATCCACTCAGCGCCACGGCTGTCACGGTATAGATCGGTCATCTTGGCCGAACGGTGACCCAGCAGTCGCTGTGCATCTCGACCTTCTTCGTCATGTAGCCTGGCCGCCAGGGACCGCTGCTCAT  >  AE015451/1737751‑1738222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.