New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	76184 =	35 (0.700)	4 (0.080)	4/322	NT	8.8%	coding (26/1374 nt)	trkA	NAD‑binding component of TrK potassium transporter
	?	AE015451	76333 =	50 (1.050)					coding (1211/1311 nt)	rsmB	Ribosomal RNA small subunit methyltransferase B

ACCGAGAACACTGAAGTGATCAAAGCCTTCCTCGCGCGCACCCCGGGCGCTCGTGAGCTGGACCTGGCGACCGAAGCCGGCCTGCGCCAGCCCCACGGCCGTCAGTTGCTGGCCCAGGAAGGCGGCCACGACGGTTTCTACTATGCCAAGCTGATCAAGATCGCCGCCTCGCGCGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCGGCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/76412‑76184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaggCCGGCTTCGGTCGCCAGGTCCAGCTCACGAGCGCCCGGGGTGCGCGCGAGGAAGGCTTTGATCACTTCAGTGTTCTCGGTCGGCAATGTGGAGCAGGTGGCGTATAGCAGCATGCCGCCCACTTCCAGGGTCGGCCACAGGGCATCGAGCAGCTCGCCTTGCAGCGTGGCCAAAGCC  >  AE015451/76333‑76509                                                                                                                                                                                                                                                                                                                                                                                                                        ACCGAGAACACTGAAGTGATCAAAGCCTTCCTCGCGCGCACCCCGGGCGCTCGTGAGCTGGACCTGGCGACCGAAGCCGGCCTGCGCCAGCCCCACGGCCGTCAGTTGCTGGCCCAGGAAGGCGGCCACGACGGTTTCTACTATGCCAAGCTGATCAAGATCGCCGCCTCGCGCGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCGGCG                                                                                                                                                                                       >  2:793939/1‑225                                                       GAGCTGGACCTGGCGACCGAAGCCGGCCTGCGCCAGCCCCACGGCCGTCAGTTGCTGGCCCAGGAAGGCGGCCACGACGGTTTCTACTATGCCAAGCTGATCAAGATCGCCGCCTCGCGCGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCG                                                                                                                                                                                          >  1:791202/1‑168                                                       GAGCTGGACCTGGCGACCGAAGCCGGCCTGCGCCAGCCCCACGGCCGTCAGTTGCTGGCCCAGGAAGGCGGCCACGACGGTTTCTACTATGCCAAGCTGATCAAGATCGCCGCCTCGCGCGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCG                                                                                                                                                                                          <  2:791199/168‑1                                                                                                                                                             AAGATCGCCGCCTCGCGCGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCGGCGCAGGCCGGCTTCGGTCGCCAGGTCCAGCTCACGAGCGCCCGGGGTGCGCGCGAGGAAGGCTTTGATCACTTCAGTGTTCTCGGTCGGCAATGTGGAGCAGGTGGCGTATAGCAGCATGCCGCCCACTTCCAGGGTCGGCC                                           >  1:814678/1‑209                                                                                                                                                             AAGATCGCCGCCTCGCGCGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCGGCGCAGGCCGGCTTCGGTCGCCAGGTCCAGCTCACGAGCGCCCGGGGTGCGCGCGAGGAAGGCTTTGATCACTTCAGTGTTCTCGGTCGGCAATGTGGAGCAGGTGGCGTATAGCAGCATGCCGCCCACTTCCAGGGTCGGCC                                           <  2:814675/209‑1                                                                                                                                                                       CCTCGCGCGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCGGCGCAGGCCGGCTTCGGTCGCCAGGTCCAGCTCACGAGCGCCCGGGGTGCGCGCGAGGAAGGCTTTGATCACTTCAGTGTTCTCGGTCGGCAATGTGGAGCAGGTGGCGTATAGCAGCATGCCGCCCACTTCCAGGGTCGGCCACAGGGCATCGAGCAGCTCGCCTTGCAGCGTGGCCAA      >  1:879273/1‑236                                                                                                                                                                              CGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCGGCGCAGGCCGGCTTCGGTCGCCAGGTCCAGCTCACGAGCGCCCGGGGTGCGCGCGAGGAAGGCTTTGATCACTTCAGTGTTCTCGGTCGGCAATGTGGAGCAGGTGGCGTATAGCAGCATGCCGCCCACTTCCAGGGTCGGCCACAGGGCATCGAGCAGCTCGCCTTGCAGCGTGGCCAAAGCC  <  2:879270/233‑1                                                                                                                                                                                                   GAGTAGCGCATGCAGATCATCATCCTCGGCGCA                                                                                                                                                                                     >  2:258009/1‑33                                                                                                                                                                                                                                                                                                                                                                                                                        ACCGAGAACACTGAAGTGATCAAAGCCTTCCTCGCGCGCACCCCGGGCGCTCGTGAGCTGGACCTGGCGACCGAAGCCGGCCTGCGCCAGCCCCACGGCCGTCAGTTGCTGGCCCAGGAAGGCGGCCACGACGGTTTCTACTATGCCAAGCTGATCAAGATCGCCGCCTCGCGCGGATAAGAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCGGCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/76412‑76184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaggCCGGCTTCGGTCGCCAGGTCCAGCTCACGAGCGCCCGGGGTGCGCGCGAGGAAGGCTTTGATCACTTCAGTGTTCTCGGTCGGCAATGTGGAGCAGGTGGCGTATAGCAGCATGCCGCCCACTTCCAGGGTCGGCCACAGGGCATCGAGCAGCTCGCCTTGCAGCGTGGCCAAAGCC  >  AE015451/76333‑76509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.