New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 381484	43 (0.860)	4 (0.080)	4/318	NT	9.4%	coding (1061/1626 nt)	PP_0317	Methyl‑accepting chemotaxis transducer
	?	AE015451	= 381669	37 (0.790)					coding (876/1626 nt)	PP_0317	Methyl‑accepting chemotaxis transducer

TGGATGCTGCCGATCATGCGCTCGATTTCGCTGGTCGACTGTTGTGTACGATGGGCAAGTGCCCGCACTTCATCGGCGACCACGGCAAAACCACGGCCCGCTTCACCGGCCCGCGCGGCTTCGATGGCTGCGTTGAGCGCCAGCAGGTTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCACCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGGTGGCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/381241‑381484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcctgcaGCAGCAGAACAATGAGATTGAACAGGCCGCCACTGCAGTCACTGAAATGACCAGTGCGGTGGAAGAAGTGGCGCGCAATGCCGTGAGCACTTCAGAAGCCTCCAGTGAAGCCAGCCGCTCCACCGGTGATGGTCGTGACCTGGTGATGGAAACCGTGGGTGCGATCGAGCGCATGAGTGGTGATGTGCA  <  AE015451/381669‑381481                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGATGCTGCCGATCATGCGCTCGATTTCGCTGGTCGACTGTTGTGTACGATGGGCAAGTGCCCGCACTTCATCGGCGACCACGGCAAAACCACGGCCCGCTTCACCGGCCCGCGCGGCTTCGATGGCTGCGTTGAGCGCCAGCAGGTTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCACCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGG                                                                                                                                                                                                        >  1:911587/1‑235                ATGCCCTCGATTTCGCTGGTCGACTGTGGTGTACGATGGGCAAGTGCCCGCACTTCATCGGCGACCACGGCAAAACCACGGCCCGCTTCACCGGCCCGCGCGGCTTCGATGGCTGCGTTGAGCGCCAGCAGGTTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCACCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGGTGGCCTGCA                                                                                                                                                                                               <  1:338987/229‑1                                          TTGTGTACGATGGGCAAGTGCCCGCACTTCATCGGCGACCACGGCAAAACCACGGCCCGCTTCACCGGCCCGCGCGGCTTCGATGGCTGCGTTGAGCGCCAGCAGGTTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCACCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGGTGGCC                                                                                                                                                                                                   <  2:621444/199‑1                                                              CCCGCACTTCATCGGCGACCACGGCAAAACCACGGCCCGCTTCACCGGCCCGCGCGGCTTCGATGGCTGCGTTGAGCGCCAGCAGGTTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCACCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGGTGGCCTGCAGCAGCAGAACAATGAGATTGAACAGGCCGCCACTGCAGTCACTGAAATGACCA                                                                                                                                          <  1:534450/236‑1                                                                 GCACTTCATCGGCGACCACGGCAAAACCACGGCCCGCTTCACCGGCCCGCGCGGCTTCGATGGCTGCGTTGAGCGCCAGCAGGTTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCACCTTGCCTATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGGTGGCCTGCAGCAGCAGAACAATGAGATTGAACAGGCCGCCACTGCAGTCACTGAAATGACCA                                                                                                                                          >  2:534447/1‑233                                                                                                                gGCGCGGCTTCGAGGGCTGCGTTGAGCGCCAGCAGGCTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCGCCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGGT                                                                                                                                                                                                       <  2:149918/124‑1                                                                                                                 GCGCGGCTTCGATGGCTGCGTTGAGCGCCAGCAGGTTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCACCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGGTGGCCTGCAGCAGCAGAACAATGAGATTGAACAGGCCGCCACT                                                                                                                                                             <  1:844393/166‑1                                                                                                                                                                               ACGTCAAGCACCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTCATCAGCGTGGCGGTGGC                                                                                                                                                                                                    <  2:78431/65‑1                                                                                                                                                                                                                         TGGGTAATCAGCTTGGCGGTGGCCTGCAGCAGCAGAACAATGAGATTGAACAGGCCGCCACTGCAGTCACTGAAATGACCAGTGCGGTGGAAGAAGTGGCGCGCAATGCCGTGAGCACTTCAGAAGCCTCCAGTGAAGCCAGCCGCTCCACCGGTGATGGTCGTGg                                                     >  2:524078/1‑165                                                                                                                                                                                                                                                    AGCAGCAGAACAATGAGATTGAACAGGCCGCCACTGCAGTCACTGAAATGACCAGTGCGGTGGAAGAAGTGGCGCGCAATGCCGTGAGCACTTCAGAAGCCTCCAGTGAAGCCAGCCGCTCCACCGGTGATGGTCGTGACCTGGTGATGGAAACCGTGGGTGCGATCGAGCGCATGAGTGGTGATGTGCA  <  1:207815/190‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGATGCTGCCGATCATGCGCTCGATTTCGCTGGTCGACTGTTGTGTACGATGGGCAAGTGCCCGCACTTCATCGGCGACCACGGCAAAACCACGGCCCGCTTCACCGGCCCGCGCGGCTTCGATGGCTGCGTTGAGCGCCAGCAGGTTGGTCTGGTCGGCCAGGCCACGGATCACGTCAAGCACCTTGCCAATGTCGCGCGACTGTTCTGCCAGGTGGGTAATCAGCTTGGCGGTGGCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/381241‑381484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcctgcaGCAGCAGAACAATGAGATTGAACAGGCCGCCACTGCAGTCACTGAAATGACCAGTGCGGTGGAAGAAGTGGCGCGCAATGCCGTGAGCACTTCAGAAGCCTCCAGTGAAGCCAGCCGCTCCACCGGTGATGGTCGTGACCTGGTGATGGAAACCGTGGGTGCGATCGAGCGCATGAGTGGTGATGTGCA  <  AE015451/381669‑381481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.