New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	967850 =	37 (0.740)	6 (0.130)	6/308	NT	17.5%	intergenic (‑29/+139)	PP_0830/PP_0831	Acetyltransferase, GNAT family/hypothetical protein
	?	AE015451	967941 =	23 (0.500)					intergenic (‑120/+48)	PP_0830/PP_0831	Acetyltransferase, GNAT family/hypothetical protein

GACAAGGAATGGCGACGCTATCAGTACCTGCTGGCGCACAAGGCCAAGCCCAAGGCACCGGCTGCGGTCAAAGGCTACGTGGCGGTGGCCGCCAAACCGTGAATCGGGGCGCGGTGTTGGATGGAAAGCGGCCTATGATGTGAGGCTGATGGCCTCTTCGCGGGTAAACCCGCTACAGGGCCTGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/968090‑967850 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATTGATCTCGTC  >  AE015451/967941‑968168                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GACAAGGAATGGCGACGCTATCAGTACCTGCTGGCGCACAAGGCCAAGCCCAAGGCACCGGCTGCGGTCAAAGGCTACGTGGCGGTGGCCGCCAAACCGTGAATCGGGGCGCGGTGTTGGATGGAAAGCGGCCTATGATGTGAGGCTGATGGCCTCTTCGCGGGTAAACCCGCTACAGGGCCTGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCG                                                                                                                                                                                                                                              <  1:325513/233‑1                                 GGCGCACAAGGCCAAGCCCAAGGCACCGGCTGCGGTCAAAGGCTACGTGGCGGTGGCCGCCAAACCGTGAATCGGGGCGCGGTGTTGGATGGAAAGCGGCCTATGATGTGAGGCTGATGGCCTCTTCGCGGGTAAACCCGCTACAGGGCCTGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAGAGGCC                                                                                                                                                                                                                                      >  2:428543/1‑209                                                            GGCTGCGGTCAAAGGGTACGTGGCGGTGGCCGCCAAACCGTGAATCGGGGCGCGGTGTTGGATGGAAAGCGGCCTATGATGTGAGGCTGATGGCCTCTTCGCGGGTAAATCCGCTACAGGGCCTGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAG                                                                                                                                                                                                                                           <  1:515059/177‑1                                                                   gtaAAAGGCTACGTGGCGGTGGCCGCCAAACCGTGAATCGGGGCGCGGTGTTGGATGGAAAGCGGCCTATGATGTGAGGCTGATGGCCTCTTCGCGGGTAAACCCGCTACAGGGCCTGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAGAGG                                                                                                                                                                                                                                        <  2:921723/170‑1                                                                                                       agCGGGGCGCGGTGTTGGATGGAAAGCGGCCTATGATGTGAGGCTGATGGCCTCGTCGCGGGTAACCCCGCTACAGGGCCTGCACAGGATTTGTGCCTTGTGCAGTACCTGTGGGGGCGGGTCCACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTT                                                                                                                                                                                                            <  1:401726/163‑1                                                                                                                                                                          CCGCTACAGGGCCTGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGC                                                                                                                                      <  1:680962/168‑1                                                                                                                                                                          CCGCTACAGGGCCTGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGC                                                                                                                                      >  2:680959/1‑168                                                                                                                                                                                       TGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAGAGGCCATCAGCCTCACATC                                                                                                                                                                                                                        >  1:606235/1‑73                                                                                                                                                                                       TGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAGAGGCCATCAGCCTCACATC                                                                                                                                                                                                                        <  2:606232/73‑1                                                                                                                                                                                              GATTTGAGCCTTGTGCAGTACCTGTGGTGGCGGGTTCACCCGCGAAGAGGCCAGCAGCCTCACATCATAGGCCCCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCC                                                                                                                                                                      <  2:562070/116‑1                                                                                                                                                                                                                                 TCACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGC              >  2:722363/1‑233                                                                                                                                                                                                                                   ACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCT                                                     <  2:761463/192‑1                                                                                                                                                                                                                                      CGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATTGATCT      >  1:193367/1‑236                                                                                                                                                                                                                                       GCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATTGATCTC     <  1:722366/236‑1                                                                                                                                                                                                                                           AGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATctgtctctta  >  1:224771/1‑225                                                                                                                                                                                                                                           AGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGT                                                                                                                     <  2:452794/120‑1                                                                                                                                                                                                                                           AGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGT                                                                                                                     >  1:452797/1‑120                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GACAAGGAATGGCGACGCTATCAGTACCTGCTGGCGCACAAGGCCAAGCCCAAGGCACCGGCTGCGGTCAAAGGCTACGTGGCGGTGGCCGCCAAACCGTGAATCGGGGCGCGGTGTTGGATGGAAAGCGGCCTATGATGTGAGGCTGATGGCCTCTTCGCGGGTAAACCCGCTACAGGGCCTGCACAGGATTTGAGCCTTGTGCAGTACCTGTGGGGGCGGGTTCACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/968090‑967850 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATTGATCTCGTC  >  AE015451/967941‑968168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.