New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	967850 =	37 (0.740)	6 (0.130)	6/308	NT	17.5%	intergenic (‑29/+139)	PP_0830/PP_0831	Acetyltransferase, GNAT family/hypothetical protein
	?	AE015451	967941 =	23 (0.500)					intergenic (‑120/+48)	PP_0830/PP_0831	Acetyltransferase, GNAT family/hypothetical protein

TGGCTTTGGGGAACATGTAGAACAGTTCGTCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATTGATCTCGTC  >  AE015451/967722‑968168                                                                                                                                                                                                                            |                                                                                                                                                                                                                                    tGGCTTTGGGGAACATGTAGAACAGTTCGTCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATa                                                                                                                                                                                                                     >  1:754541/1‑236 (MQ=255)        ggggAACATGTAGAACAGTTCGTCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCg                                                                                                                                                                                                                >  2:566803/1‑234 (MQ=255)                       cAGTTCGCCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTtcc                                                                                                                                                                                                          <  1:135940/225‑1 (MQ=255)                            cGTCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGc                                                                                                                                                                                                                                >  2:61662/1‑198 (MQ=255)                            cGTCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCAcat                                                                                                                                                                                                                         >  1:858342/1‑205 (MQ=255)                             gTCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGccc                                                                                                                                                                                          >  1:761466/1‑235 (MQ=255)                             gTCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCG‑CCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTca                                                                                                                                                                                                                            >  1:591066/1‑200 (MQ=255)                                                      aTAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTgg                                                                                                                                                                           >  1:78403/1‑225 (MQ=255)                                                        aaCGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTggcggc                                                                                                                                                                       <  1:267130/227‑1 (MQ=255)                                                          cGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCa                                                                                                                                                               <  2:813010/233‑1 (MQ=255)                                                                   cttctGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGCACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATACGCCGCTTTCCATCCAACACCTCGCCCCGATTCCCGGTTTGGCGGCCACCGCCACGTAGCCTTTgt                                                                                                                                                   >  1:784808/1‑235 (MQ=255)                                                                     tctGGCGGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGc                                                                                                                                                                                                               <  1:261184/174‑1 (MQ=255)                                                                                 agcggggcgcggtgttggatggaaagcggcctatgatgtgaggctgatggcctcgtcgcgggtaaccccgctacagggcctgcacaggatttgtgccttgtgcagtacctgtgggggcgggtccacccgcgaagaggccATCAGCCTCACATCATAGGCCGCttt                                                                                                                                                                                                            <  1:401726‑M2/26‑1 (MQ=255)                                                                                                       aaagcggcctatgatgtgaggctgatGGCCTCTTCGCGGGTGGACCCGCCCCCACAGGTACTGCACAAGGCACAAATCCTGTGCAGGCCCTGTAGCGGGGTTACCCGCGACGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCccgct                                                                                                                                                                                      <  1:401726‑M1/139‑3 (MQ=255)                                                                                                             cTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGAt                                                                                                                                                                                      >  2:731066/1‑159 (MQ=255)                                                                                                             cTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCcagca                                                                                                            >  2:874601/1‑233 (MQ=255)                                                                                                                ctcGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGGTTACCCGCGAAGAGGCCATCAGCCTCACCTCATAGGCCGCTTTCCATCCAACACCGCGCCCCGa                                                                                                                                                                                       >  2:194347/1‑155 (MQ=255)                                                                                                                   gcgTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCGGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGa                                                                                                    <  1:66311/235‑1 (MQ=255)                                                                                                                                 GGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGcc                                                                                                                >  2:428543‑M1/1‑209 (MQ=255)                                                                                                                                   CCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAgccttttac                                                                                                                                                  <  2:921723‑M1/173‑4 (MQ=255)                                                                                                                                      CTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGATTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTACCCTTTGACCGCAGcc                                                                                                                                           <  1:515059‑M1/177‑1 (MQ=255)                                                                                                                                         CGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTc                                                                                <  1:325513‑M1/233‑1 (MQ=255)                                                                                                                                                    ccgctacagggcctgcacaggatttgagccttgtgcagtacctgtgggggcgggttcacccgcgaagaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGc                                                                                                                                      >  2:680959‑M2/73‑168 (MQ=255)                                                                                                                                                    ccgctacagggcctgcacaggatttgagccttgtgcagtacctgtgggggcgggttcacccgcgaagaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGc                                                                                                                                      <  1:680962‑M2/96‑1 (MQ=255)                                                                                                                                                                 tgcacaggatttgagccttgtgcagtacctgtgggggcgggttcacccgcgaagaggccATCAGCCTCAcatc                                                                                                                                                                                                                        <  2:606232‑M2/14‑1 (MQ=255)                                                                                                                                                                 tgcacaggatttgagccttgtgcagtacctgtgggggcgggttcacccgcgaagaggccATCAGCCTCAcatc                                                                                                                                                                                                                        >  1:606235‑M2/60‑73 (MQ=255)                                                                                                                                                                        gatttgagccttgtgcagtacctgtggtggcgggttcacccgcgaagaggccAGCAGCCTCACATCATAGGCCCCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGcc                                                                                                                                                                      <  2:562070‑M2/64‑1 (MQ=255)                                                                                                                                                                         aaGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGGCGTCAGCCTCACATCAGAGGCCGCTTTCCATCCAACACCGCGccgc                                                                                                                                                                                         >  2:638653/1‑94 (MQ=39)                                                                                                                                                                         aaGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGt                                             >  1:708381/1‑236 (MQ=255)                                                                                                                                                                             cTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCAACCGCCACGTAGACTTTGACCGCAGCCGGTGCCTTGGGCTTTGCCCTGTGCGCCAGCAGGTACTGCTa                                                                                                  >  1:30037/1‑179 (MQ=255)                                                                                                                                                                              tCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTg                                        >  1:715745/1‑236 (MQ=255)                                                                                                                                                                                         gCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTc                             >  1:461325/1‑236 (MQ=255)                                                                                                                                                                                                cTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAg                                                                                                                                             >  2:772755/1‑117 (MQ=255)                                                                                                                                                                                                cTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAg                                                                                                                                             <  1:772758/117‑1 (MQ=255)                                                                                                                                                                                                           tcacccgcgaagaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGc              >  2:722363‑M2/18‑233 (MQ=255)                                                                                                                                                                                                            tACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCCGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGCTAGCGTCGCCATGccc                                                                                    >  2:217974/1‑161 (MQ=255)                                                                                                                                                                                                            tACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCCTGCCGACCAGGTCCGGGCGCtt                    >  1:113095/1‑226 (MQ=255)                                                                                                                                                                                                             acccgcgaagaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCt                                                     <  2:761463‑M2/177‑1 (MQ=255)                                                                                                                                                                                                                cgcgaagaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATTGAtct      >  1:193367‑M2/13‑236 (MQ=255)                                                                                                                                                                                                                 gcgaagaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATTGAtctc     <  1:722366‑M2/225‑1 (MQ=255)                                                                                                                                                                                                                     agaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTtgt                                                                                                                     >  1:452797‑M2/8‑120 (MQ=255)                                                                                                                                                                                                                     agaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTtgt                                                                                                                     <  2:452794‑M2/113‑1 (MQ=255)                                                                                                                                                                                                                     agaggccATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGcttgcccgcatctgtctctta  >  1:224771‑M2/8‑225 (MQ=255)                                                                                                                                                                                                                            |                                                                                                                                                                                                                                    TGGCTTTGGGGAACATGTAGAACAGTTCGTCCGGGCTCTGCGGGAAGCTGCAGATAACGGGGATGTCTTCTGGCCGGATGGGGCGGTGGGTCAGGTGCATGGCAGGTCCTTCTCGCGTTGGCTGGCAGGGCCTCTTCGCGGGTGAACCCGCCCCCACAGGTACTGCACAAGGCTCAAATCCTGTGCAGGCCCTGTAGCGGGTTTACCCGCGAAGAGGCCATCAGCCTCACATCATAGGCCGCTTTCCATCCAACACCGCGCCCCGATTCACGGTTTGGCGGCCACCGCCACGTAGCCTTTGACCGCAGCCGGTGCCTTGGGCTTGGCCTTGTGCGCCAGCAGGTACTGATAGCGTCGCCATTCCTTGTCGATTTCGCTGAACGACATGAACACGCTGATACGGTCCTTGCCGACCAGGTCCGGGCGCTTGCCCGCATTGATCTCGTC  >  AE015451/967722‑968168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.