New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1167535	35 (0.700)	6 (0.130)	5/322	NT	14.6%	coding (479/729 nt)	pgl	6‑phosphogluconolactonase
	?	AE015451	= 1167560	37 (0.780)					coding (504/729 nt)	pgl	6‑phosphogluconolactonase

TGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATGGGCGACGATGGCCATACCGCCTCGCTGTTCCCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1167298‑1167535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgccagGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAACAGCGAGGCGGTATGGCCATCGTCGCCCATGCCCAGCACCAGCACGTCGATCGGCGGTAGCTCGGCCAAGGCCTGGTCAGCTTTGAGCGCAGCTGCATCAAGGTTCTCCGCCTGCTGGTACAGGCCAACGAAACGGGCCTTGGCCGCTTCG  <  AE015451/1167560‑1167374                                                                                                                                                                                                                                                                                                                                                                                                                                           TGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATGGGCGACGATGGCCATACCGCCTCGCTGTTCCCC                                                                                                                                                                                                  >  2:564894/1‑233              cgGGGTGCCGGTGGAGCACGCCGACAGCAAGGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATGGGCGACGATGGCCATACCGCCTCGCTGTTCCC                                                                                                                                                                                                   <  2:729331/217‑1                                                                                                                                 GATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATGGGCGACGATGGCCATACCGCCTCGCTGTTCCCCGCCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGG                                                                                                                                                            <  2:725327/143‑1                                                                                                                                                                                                      ATGGGCGACGATGGCCATACCGCCTCGCTGTTCCCCGCCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGc                                                                                                                                                           >  1:737286/1‑74                                                                                                                                                                                                      ATGGGCGACGATGGCCATACCGCCTCGCTGTTCCCCGCCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGc                                                                                                                                                           <  2:737283/75‑2                                                                                                                                                                                                        GGGCGACGATGGCCATACCGCCTCGCTGTTCCCCGCCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAACAGCGAGGCGGTATGGCCATCGTCGCCCATGCCCAGCACCAGCACGTCGATCGGCGGTAGCTCG                                                                                         <  1:753325/139‑1                                                                                                                                                                                                                  GGCCATACCGCCTCGCTGTTCCCCGCCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAACAGCGAGGCGGTATGGCCAGCGTCGg                                                                                                                               >  2:753322/1‑90                                                                                                                                                                                                                           GCCTCGCTGTTCCCCGCCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAACAGC                                                                                                                                                     >  1:185544/1‑60                                                                                                                                                                                                                                       CCCGCCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAACAGCGAGGCGGTATGGCCATCGTCGCCCATGCCCAGCACCAGCACGTCGATCGGCGGTA                                                                                              >  2:756638/1‑103                                                                                                                                                                                                                                       CCCGCCAGGTCCAGGCCTGCTACCAGGTTGGGACTGGCGGGGAACAGCGAGGCGGTATGGCCATCGTCGCCCATGCCCAGCACCAGCACGTCGATCGGCGGTA                                                                                              <  1:756641/103‑1                                                                                                                                                                                                                                        CCGCGAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAAGAGCGAGGCGGTATGGCCATCGTCGCCCATGCCCAGCACCAGCACGTCGATCGGCGGTAGCTCGGCCAAGGCCTGGTCAGCTTTGAGCGCAGCTGCATCAAGGTTCTCCGCCTGCTG                                    <  2:163988/160‑1                                                                                                                                                                                                                                          GCCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAACAGCGAGGCGGTATGGCCATCGTCGCCCATGCCCAGCACCAGCACGTCGATCGGCGGTAGCTCGGCCAAGGCCTGGTCAGCTTTGAGCGCAGCTGCA                                                        <  2:273144/138‑1                                                                                                                                                                                                                                           CCAGGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAACAGCGAGGCGGTATGGCCATCGTCGCCCATGCCCAGCACCAGCACGTCGATCGGCGGTAGCTCGGCCAAGGCCTGGTCAGCTTTGAGCGCAGCTGCATCAAGGTTCTCCGCCTGCTGGTACAGGCCAACGAAACGGGCCTTGGCCGCTTCG  <  2:650552/191‑1                                                                                                                                                                                                                                                                                                                                                                                                                                           TGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATGGGCGACGATGGCCATACCGCCTCGCTGTTCCCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1167298‑1167535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgccagGTCCAGGCCTGCTTCCAGGTTGGGACTGGCGGGGAACAGCGAGGCGGTATGGCCATCGTCGCCCATGCCCAGCACCAGCACGTCGATCGGCGGTAGCTCGGCCAAGGCCTGGTCAGCTTTGAGCGCAGCTGCATCAAGGTTCTCCGCCTGCTGGTACAGGCCAACGAAACGGGCCTTGGCCGCTTCG  <  AE015451/1167560‑1167374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.