New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 143305429 (0.580)5 (0.110) 5/298 NT 14.0% intergenic (+42/+82) xenA/PP_1255 XenA/putative cis‑4‑hydroxy‑D‑proline oxidase
?AE015451 = 1433106 36 (0.820)intergenic (+94/+30) xenA/PP_1255 XenA/putative cis‑4‑hydroxy‑D‑proline oxidase

CCGTGACGTCGGCGTGGGGCTTTGGTACGCCGCAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGATCTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1432810‑1433054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcaagcccACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGCGGTGTCTCTGTGGGTGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCTCCAAGCCTCAGCGATAACGCTCGAGCCAGTGTGCATAAGGCGCCGGCAAGGTCCAGGAGGCTTTTTCCACCCCCAGCTCCTTGGCAGCAAAGTAAGCCCAGTGCGGGTCGGCCAGGTGCGCGCGCCCTACCG  <  AE015451/1433106‑1432888
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
CCGTGACGTCGGCGTGGGGCTTTGGTACGCCGCAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGATCTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCG                                                                                                                                                                                                                                      <  1:70316/236‑1
   TGACGTCGGCGTGGGGCTTTGGTACGCCGCAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGATCTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGC                                                                                                                                                                                                                                   <  1:564236/236‑1
   TGACGTCGGCGTGGGGCTTTGGTACGCCGCAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGATCTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGC                                                                                                                                                                                                                                   <  1:879441/236‑1
   TGAAGTCGGCGTGGGGCTTTGGTACGCCGCAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGATCTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGC                                                                                                                                                                                                                                   <  1:283201/236‑1
          GGCGTGGGGCTTTGGTACGCCGCAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGATCTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCC                                                                                                                                                                                                                             <  1:427988/235‑1
                     TTGGTACGCCGCAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGAACTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCC                                                                                                                                                                                                                             <  1:309598/224‑1
                                CAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGATCTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCACTT                                                                                                                                                                                                                         <  1:159214/217‑1
                                                                                                          GCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGC                                                                                                                                                                                                                                               >  2:871938/1‑121
                                                                                                                 GCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGCGGTGTCTCTGTGGGTGCGGGCTT                                                                                                                                                                   <  1:604694/190‑1
                                                                                                                             GCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCC                                                                                                                                                                                                                             <  1:188777/120‑1
                                                                                                                             GCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCC                                                                                                                                                                                                                             >  2:188775/1‑120
                                                                                                                              CCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGCGGTGTC                                                                                                                                                                                    >  2:604691/1‑160
                                                                                                                                                                       GCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCACTTC                                                                                                                                                                                                                        >  1:368551/1‑83
                                                                                                                                                                       GCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCACTTC                                                                                                                                                                                                                        <  2:368548/83‑1
                                                                                                                                                                                          TCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGC                                                                                                                                                                                          <  2:88938/94‑1
                                                                                                                                                                                          TCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGC                                                                                                                                                                                          >  1:88938/1‑94
                                                                                                                                                                                                               TGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCACTTCCACAGAGAGGGTGCAGTAGCTGAAACCTGCGG                                                                                                                                                                                        >  1:331200/1‑75
                                                                                                                                                                                                                                   CCATTCGCGGGCAAGCCCACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGCGGTGTCTCTGTGGGTGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCTCCAAGCCTCAGCGATAACGCTCGAGCCAGTGTGCATAAGGCGCCGGCAAGGTCCAGGAGGC                                                                         >  1:192774/1‑166
                                                                                                                                                                                                                                       TCGCGGGCAAGCCCACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGCGGTGTCTCTGTGGGTGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCTCCAAGCCTCAGCGATAACGCTCGAGCCACTGTGCATAAGGCGCCGGCAAGGTCCAGGAGGCT                                                                        >  2:789975/1‑163
                                                                                                                                                                                                                                         GCGGGCAAGCCCACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGCGGTGTCTCTGTGGGTGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCTCCAAGCCTCAGCGATAACGCTCGAGCCAGTGTGCATAAGGCGCCGGCAAGGTCCAGGAGGCTTTTTCCACCCCCAGCTCCTTGGCAGCAAAGTAAGCCCAGTGCGGGTCGGCCAGGTGCGCGCGCCCTACCG  >  1:893023/1‑231
                                                                                                                                                                                                                                                   CCACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGCGGTGTCTCTGTGGGTGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCTCCAAGCCTCAGCGATAACGCTCGAGCCAGTGTGCATAAGGCGCCGGCAAGGTCCAGGAGGCTTTTTCCACCCCCAGCTCCTTGGCAGCAAAGTAAGCCCAGTGCGG                            >  1:617458/1‑195
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
CCGTGACGTCGGCGTGGGGCTTTGGTACGCCGCAGTTGGCGGAGGCCGCATTGCAGGCCAACCAGCTGGATCTGGTTTCGGTAGGGCGCGCGCACCTGGCCGACCCGCACTGGGCTTACTTTGCTGCCAAGGAGCTGGGGGTGGAAAAAGCCTCCTGGACCTTGCCGGCGCCTTATGCACACTGGCTCGAGCGTTATCGCTGAGGCTTGGAGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1432810‑1433054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcaagcccACTTCCACAGAGAGGGTGCAGTATCTGAAACCTGCGGTGTCTCTGTGGGTGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCTCCAAGCCTCAGCGATAACGCTCGAGCCAGTGTGCATAAGGCGCCGGCAAGGTCCAGGAGGCTTTTTCCACCCCCAGCTCCTTGGCAGCAAAGTAAGCCCAGTGCGGGTCGGCCAGGTGCGCGCGCCCTACCG  <  AE015451/1433106‑1432888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.