New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2639792 =	33 (0.660)	3 (0.060)	3/322	NT	9.2%	coding (865/1479 nt)	PP_2310	Methyl‑accepting chemotaxis transducer
	?	AE015451	2639812 =	28 (0.590)					coding (845/1479 nt)	PP_2310	Methyl‑accepting chemotaxis transducer

ACCTATCACCGCGTGGTCAGCACCGTCGCCCACAGCGCAGCACAGCTGGACTCGGGCGCTGCACGCCTGGCCGCCAGCATGAGCGACGTACGCCATGGCATGCTCGGCCAGCAGAGTGAAACCGACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2640032‑2639792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaagGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGCGGTGATAGGTGGACTGCATGGCG  >  AE015451/2639812‑2640045                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACCTATCACCGCGTGGTCAGCACCGTCGCCCACAGCGCAGCACAGCTGGACTCGGGCGCTGCACGCCTGGCCGCCAGCATGAGCGACGTACGCCATGGCATGCTCGGCCAGCAGAGTGAAACCGACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGC                                                                                                                                                                                                                                                   <  2:541245/234‑1   CTATCACCGCGTGGTCAGCACCGTCGCCCACAGCGCAGCACAGCTGGACTCGGGCGCTGCACGCCTGGCCGCCAGCATGAGCGACGTACGCCATGGCATGCTCGGCCAGCAGAGTGAAACCGACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGGCACAAACCGCCGACACCCTGGCCGGCAGCGGC                                                                                                                                                                                                                                                >  1:253310/1‑235                                                                                                                             ACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGG                                                                                                                                                                                                             >  1:508153/1‑148                                                                                                                             ACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGG                                                                                                                                                                                                             <  2:508150/148‑1                                                                                                                                                                         CACATTGCCCAGCCCGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCA                                                                                                                                                                                                           <  1:274103/106‑1                                                                                                                                                                                                                                                AGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGCGGTGATAGGTGGACTGCATGGCG  <  1:293809/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACCTATCACCGCGTGGTCAGCACCGTCGCCCACAGCGCAGCACAGCTGGACTCGGGCGCTGCACGCCTGGCCGCCAGCATGAGCGACGTACGCCATGGCATGCTCGGCCAGCAGAGTGAAACCGACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2640032‑2639792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaagGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGCGGTGATAGGTGGACTGCATGGCG  >  AE015451/2639812‑2640045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.