New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2639792 =	33 (0.660)	3 (0.060)	3/322	NT	9.2%	coding (865/1479 nt)	PP_2310	Methyl‑accepting chemotaxis transducer
	?	AE015451	2639812 =	28 (0.590)					coding (845/1479 nt)	PP_2310	Methyl‑accepting chemotaxis transducer

GGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGC  >  AE015451/2639558‑2640022                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                       cgccatgcagtccacctatcaccgcgtggtcagcaccgtcgcccacagcgcagcacagctggactcgggcgctgcacgcctggccgccagcatgagcgacgtacgccatggcatgctcggccagcagagtgaaaccgaccaggccgccactgccatcaacgaaatgtcggcgaccgtgcaccacattgcccagcacgccggtgccacccgcgatttgtcacaaaccgccgacacCt                                                                                                                                                                                                                                       <  1:293809‑M1/2‑1 (MQ=255)     gcgcACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGc                                                                                                                                                                                                                                   >  1:814283/1‑236 (MQ=255)                        acGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGgt                                                                                                                                                                                                                   >  2:816600/1‑233 (MQ=255)                        acGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGGTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCtg                                                                                                                                                                                                                                      >  1:191303/1‑213 (MQ=255)                          ggCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGgtgt                                                                                                                                                                                                                 >  2:927520/1‑233 (MQ=255)                          ggCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTcgg                                                                                                                                                                                                              >  1:299470/1‑236 (MQ=255)                            cAAAGCCCCGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGc                                                                                                                                                                                                                                <  1:170707/216‑1 (MQ=255)                                                  ggCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAg                                                                                                                                                                                                                     >  2:630027/1‑205 (MQ=255)                                                     gcgcgcgGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCa                                                                                                                                                                                    <  1:630030/235‑1 (MQ=255)                                                           ggCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCa                                                                                                                                                                                    <  2:814280/229‑1 (MQ=255)                                                           ggCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCAcc                                                                                                                                                                                  <  1:927523/231‑1 (MQ=255)                                                                              aGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCAc                                                                                                                                                          <  1:506001/236‑1 (MQ=255)                                                                                          ttGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGc                                                                                                                                                                               <  2:873817/203‑1 (MQ=255)                                                                                             gTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATcgcg                                                                                                                                                                                           <  1:540358/188‑1 (MQ=255)                                                                                                  ttCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTGCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGa                                                                                                                                      <  1:283842/236‑1 (MQ=255)                                                                                                        actACTGTGGATCACCCTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTcggc                                                                                                                                                                                                             <  2:202023/157‑1 (MQ=255)                                                                                                          tACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTg                                                                                                                              >  1:317981/1‑236 (MQ=255)                                                                                                               tgGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCa                                                                                                                                                           >  1:629913/1‑202 (MQ=255)                                                                                                                  aTCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAg                                                                                                                                                                                                                     >  2:923627/1‑141 (MQ=255)                                                                                                                  aTCACACTGACTACACCGTTGATCTTCTGGCTGTCCGCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCGGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTcggcgg                                                                                                                                                                                                           >  1:593445/1‑151 (MQ=255)                                                                                                                       acTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCAc                                                                                                                                                          >  2:547596/1‑195 (MQ=255)                                                                                                                              acacCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGTCaaa                                                                                                                                                                                                >  2:162365/1‑150 (MQ=255)                                                                                                                              acacCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGGGTCGGCGGTTtgtgcccact                                                                                                                                                                                               >  1:179744/1‑145 (MQ=255)                                                                                                                                acCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTgg                                                                                                                                                                        <  2:230735/172‑1 (MQ=255)                                                                                                                                        tcttctGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCaag                                                                                                                                                                   >  2:354602/1‑168 (MQ=255)                                                                                                                                                      tCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGGTTGGCCGCTGCCGGCCAGGGTGTCGGCGGGTTGGGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAAt                                                                                                                                                                   >  2:526483/1‑155 (MQ=255)                                                                                                                                                         gCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCt                                                                                                                       <  2:703524/196‑1 (MQ=255)                                                                                                                                                                             ggCAGTTGGTTGCACGCCGCTGGAAAGCCCGTAAATCGAATCCTGCACTGGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGGGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCa                                                                       <  1:82373/224‑1 (MQ=255)                                                                                                                                                                                    tgttgCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTggc                                                                <  1:547214/224‑1 (MQ=255)                                                                                                                                                                                     gttgCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAg                                                          >  2:759721/1‑229 (MQ=255)                                                                                                                                                                                            gccgcTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCAt                                                                                           <  1:230626/189‑1 (MQ=255)                                                                                                                                                                                               gcTGGAAAGCCCGGAAATCGAATCCTGCAATCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCACCGAAATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAg                                                                                              >  2:576726/1‑183 (MQ=255)                                                                                                                                                                                                          tgccacccgcgatttgtcacaaaccgccgacacCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGGGCTGGGCAAtgtg                                                                                                                                                                <  1:274103‑M1/73‑1 (MQ=255)                                                                                                                                                                                                           ggAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCAt                                                                                           <  2:520217/174‑1 (MQ=255)                                                                                                                                                                                                           ggAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCtgtg                                >  2:784748/1‑233 (MQ=255)                                                                                                                                                                                                            ccacccgcgatttgtcacaaaccgccgacacCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGt                                                                                                                    <  2:508150‑M1/117‑1 (MQ=255)                                                                                                                                                                                                            ccacccgcgatttgtcacaaaccgccgacacCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGt                                                                                                                    >  1:508153‑M1/32‑148 (MQ=255)                                                                                                                                                                                                                                  tGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACCAATCGCGGGTGGCACCGGCGTGCTGAGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTCCGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTg         >  2:498310/1‑233 (MQ=255)                                                                                                                                                                                                                                        ccGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCAcgc  <  2:317978/234‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                       GGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCGTTGATCTTCTGGCTGTCCTCGGCTAGTTGTCGAATCATCTCGGCAGTTTGTTGCACGCCGCTGGAAAGCCCGGAAATCGAATCCTGCACTCGGCTGACTACCGCTTGGCCGCTGCCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGC  >  AE015451/2639558‑2640022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.