New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3220484	42 (0.840)	5 (0.100)	5/324	NT	10.8%	coding (528/1161 nt)	PP_5539	conserved exported protein of unknown function
	?	AE015451	= 3220485	42 (0.880)					coding (527/1161 nt)	PP_5539	conserved exported protein of unknown function

GCCGATGGACGCGAAACCGCCTTTCTTGCGGTTCAGGCTCAGGAAGTCGACCTGTGTAGGCGAGCCCCCTGGGGCGACGACCGAGGCGCTGAGGTTCGTGTCGATGTCCGCTTCGGCGTACCCGAGACGCAGCGTGCCGAAGTCATAGGTTTCCAGGCTGACGTTCGCCGCGAAGATCTTCTTGTAGTCGATGTCGTACAAGTCATCCATGGCGAACAAGTTGCGGTTGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3220250‑3220484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccAGGCCGCCAACCGCAACTTGTTCGCCATGGATGACTTGTACGACATCGACTACAAGAAGATCTTCGCGGCGAACGTCAGCCTGGAAACCTATGACTTCGGCACGCTGCGTCTCGGGTACGCCGAAGCGGACATCGACACGAACCTCAGCGCCTCGGTCGTCGCCCCAGGGGGCTCGCCTACACAGGTCGACTTCCTGAGCCTGAACCGCAAGAAAGGCGGTTTCGCGT  <  AE015451/3220485‑3220258                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCCGATGGACGCGAAACCGCCTTTCTTGCGGTTCAGGCTCAGGAAGTCGACCTGTGTAGGCGAGCCCCCTGGGGCGACGACCGAGGCGCTGAGGTTCGTGTCGATGTCCGCTTCGGCGTACCCGAGACGCAGCGTGCCGAAGTCATAGGTTTCCAGGCTGACGTTCGCCGCGAAGATCTTCTTGTAGTCGATGTCGTACAAGTCATCCATGGCGAACAAGTTGCGGTTGGCGGCC                                                                                                                                                                                                                                      >  1:816007/1‑235                                                                                                                                                            GGCTGACGTTCGCCGCGAAGATCTTCTTGTAGTCGATGTCGTACAAGACATCCATGGCGAACAAGTTGCGGTTGGCGGCCAGGCCGCCAACCGCAACTTGTTCGCCATGGATGACTCGTACGACATCGACTACAAGAAGATCTTCGCGG                                                                                                                                                                 >  2:422270/1‑149                                                                                                                                                                                              GATGTCGTACAAGTCATCCATGGCGAACAAGTTGCGGTTGGCGGCCAGGCCGCCAACCGCAACTTGTTCGCCATGGATGACTTGTACGACATCGACTACAAGAAGATCTTCGCGGCGAACGTCAGCCTGGAAACCTATGACTTCGGCACGCTGCGTCTCGGGTACGCCG                                                                                                           <  1:434691/169‑1                                                                                                                                                                                              GATGTCGTACAAGTCATCCATGGCGAACAAGTTGCGGTTGGCGGCCAGGCCGCCAACCGCAACTTGTTCGCCATGGATGACTTGTACGACATCGACTACAAGAAGATCTTCGCGGCGAACGTCAGCCTGGAAACCTATGACTTCGGCACGCTGCGTCTCGGGTACGCCG                                                                                                           >  2:434688/1‑169                                                                                                                                                                                              GATGTCGTACAAGTCATCCATGGCGAACAAGTTGCGGTTGGCGGCC                                                                                                                                                                                                                                      <  1:501621/46‑1                                                                                                                                                                                              GATGTCGTACAAGTCATCCATGGCGAACAAGTTGCGGTTGGCGGCC                                                                                                                                                                                                                                      >  2:501618/1‑46                                                                                                                                                                                                  TCGTACAAGTCATCCATGGCGAACAAGTTGCGGTTGGCGGCCAGGCCGCCAACCGCAACTTGTTCGCCATGGATGACTTGTACGACATCGACTACAAGAAGATCTTCGCGGCGAACGTCAGCCTGGAAACCTATGACTTCGGCACGCTGCGTCTCGGGTACGCCGAAGCGGACATCGACACGAACCTC                                                                                    >  1:676408/1‑188                                                                                                                                                                                                                 ATGGCGAACAAGTTGCGGTTGGCGGCCAGGCCGCCAACCGCAACTTGTTCGCCATGGATGACTTGTACGACATCGACTACAAGAAGATCTTCGCGGCGAACGTCAGCCTGGAAACCTATGACTTCGGCACGCTGCGTCTCGGGTACGCCGAAGCGGACATCGACACGAACCTCAGCGCCTCGGTCGTCGCCCCAGTGGGCTCGCCTA                                                  >  1:399877/1‑207                                                                                                                                                                                                                                    TGGCGGCCAGGCCGCCAACCGCAACTTGTTCGCCATGGATGACTTGTACGACATCGACTACAAGAAGATCTTCGCGGCGAACGTCAGCCTGGAAACCTATGACTTCGGCACGCTGCGTCTCGGGTACGCCGAAGCGGACATCGACACGAACCTCAGCGCCTCGGTCGTCGCCCCAGGGGGCTCGCCTACACAGGTCGACTTCCTGAGCCTGAACCGCAAGAAAGGCGGTTTCGCGT  >  1:658367/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCCGATGGACGCGAAACCGCCTTTCTTGCGGTTCAGGCTCAGGAAGTCGACCTGTGTAGGCGAGCCCCCTGGGGCGACGACCGAGGCGCTGAGGTTCGTGTCGATGTCCGCTTCGGCGTACCCGAGACGCAGCGTGCCGAAGTCATAGGTTTCCAGGCTGACGTTCGCCGCGAAGATCTTCTTGTAGTCGATGTCGTACAAGTCATCCATGGCGAACAAGTTGCGGTTGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3220250‑3220484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccAGGCCGCCAACCGCAACTTGTTCGCCATGGATGACTTGTACGACATCGACTACAAGAAGATCTTCGCGGCGAACGTCAGCCTGGAAACCTATGACTTCGGCACGCTGCGTCTCGGGTACGCCGAAGCGGACATCGACACGAACCTCAGCGCCTCGGTCGTCGCCCCAGGGGGCTCGCCTACACAGGTCGACTTCCTGAGCCTGAACCGCAAGAAAGGCGGTTTCGCGT  <  AE015451/3220485‑3220258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.