New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3409928 =	57 (1.140)	6 (0.120)	6/328	NT	9.7%	intergenic (‑494/‑42)	PP_3022/PP_3024	Transcriptional regulator, AraC family/conserved protein of unknown function
	?	AE015451	= 3450711	56 (1.150)					intergenic (‑125/+258)	PP_5558/PP_3069	putative transcriptional xre family of phage origin/Outer membrane autotransporter

TTTTGCCAAGTCCGCTGTTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3410136‑3409928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACCATGGAAGAAGGCATCCCGAAAGAGATCGAAGAATTTTTCGCTGACCTCCCTTTAGGTTTCCGCTCA  <  AE015451/3450711‑3450479                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTTGCCAAGTCCGCTGTTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCCATTTACCCTGACGCTAGAGGTTATATTGTCAGTCGCTAGGct                                                                                                                                                                                                                                            >  2:182421/1‑206                        AATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGC                                                                                                                                                                                                                                    >  1:750929/1‑193                                    CCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGA                                                                                                                                                                             >  1:244658/1‑236                                            AGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTAT                                                                                                                                                                      >  1:818099/1‑235                                                    TTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGGAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTT                                                                                                                                                                                                                                           >  2:415886/1‑158                                                                                                              AGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGC                                                                                                                                                                                  <  2:695114/157‑1                                                                                                                  TGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACG                                                                                                  <  2:818096/233‑1                                                                                                                                                              TTGATACCAATTTACACTGAAGCTAGTGTTTTTATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTG                                                                                                                                      <  2:709606/153‑1                                                                                                                                                                                                      ggctCTAGGGTTTCCTAGCGCCGGATAATAGAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATTCATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCAT                                                                                                                             <  2:254096/118‑1                                                                                                                                                                                                           TAGGATTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGACTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACCATGGAAGA                                                            <  1:539528/182‑1                                                                                                                                                                                                                TTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACCATGGAAGAAGGCATCCCGAAAGAGATCGAAGAATTTTTCGCTGACCTCCCTTTAGGTTTCCGCTCA  >  1:765744/1‑235                                                                                                                                                                                                                TTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACAT                                                                                                                                                                  >  1:757124/1‑75                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTTGCCAAGTCCGCTGTTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3410136‑3409928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACCATGGAAGAAGGCATCCCGAAAGAGATCGAAGAATTTTTCGCTGACCTCCCTTTAGGTTTCCGCTCA  <  AE015451/3450711‑3450479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.