New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3409928 =	57 (1.140)	6 (0.120)	6/328	NT	9.7%	intergenic (‑494/‑42)	PP_3022/PP_3024	Transcriptional regulator, AraC family/conserved protein of unknown function
	?	AE015451	= 3450711	56 (1.150)					intergenic (‑125/+258)	PP_5558/PP_3069	putative transcriptional xre family of phage origin/Outer membrane autotransporter

CCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGGCAAAAGCATGGGCGTGTGAGACCG  >  AE015451/3409695‑3410155                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                    tgagcggaaacctaaagggaggtcagcgaaaaattcttcgatctctttcgggatgccttcttccatggtcggtgtcgggaaggtaatgatgtcggccgtcatggtcactactcgctatactgtatgcatgaacagtatagcgagaaagccatcttaagcaatgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtaa                                                                                                                                                                                                                                    >  1:765744‑M1/234‑235 (MQ=255)             ttGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTACATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACt                                                                                                                                                                                                                         <  2:716935/234‑1 (MQ=255)                                      ggCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGt                                                                                                                                                                                               <  1:387848/235‑1 (MQ=255)                                             aTGGGCCTGGCAGTGGTGTTGCATACCAGCGACTACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGt                                                                                                                                                                                       <  1:418473/236‑1 (MQ=255)                                                ggCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTAt                                                                                                                                                                                     <  1:406538/235‑1 (MQ=255)                                                        aGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTc                                                                                                                                                                             >  1:477852/1‑235 (MQ=255)                                                           tcttccatggtcggtgtcgggaaggtaatgatgtcggccgtcatggtcactactcgctatactgtatgcatgaacagtatagcgagaaagccatcttaagcaatgtatacggatcaagtcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAATCCTa                                                                                                                                                                                                                               <  1:539528‑M1/7‑1 (MQ=255)                                                            gtgtTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCa                                                                                                                                                                           <  2:619286/233‑1 (MQ=255)                                                                   aTACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGc                                                                                                                                                                        >  1:681259/1‑229 (MQ=255)                                                                              tACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCGGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACaa                                                                                                                                                                                                                    <  2:71093/174‑1 (MQ=255)                                                                                    ttCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACaga                                                                                                                                                  >  1:658246/1‑234 (MQ=255)                                                                                    tgccTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACt                                                                                                                                                                 <  2:905582/217‑1 (MQ=255)                                                                                      ccTGGCCATCAAGTGGGTGGGCGCGGCCTACCTGTTCTCCATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGt                                                                                                                                                                                               <  2:819380/187‑1 (MQ=255)                                                                                      ccTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTc                                                                                                                                                                >  2:597934/1‑218 (MQ=255)                                                                                      ccTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCa                                                                                                                                              >  1:815366/1‑236 (MQ=255)                                                                                         ggCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATACACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTcagcag                                                                                                                                                           >  1:522174/1‑220 (MQ=255)                                                                                            cATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGc                                                                                                                                        >  1:708772/1‑236 (MQ=255)                                                                                             aTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACtcatca                                                                                                                                                            >  1:519930/1‑215 (MQ=255)                                                                                             aTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGc                                                                                                                                                         >  1:397721/1‑218 (MQ=255)                                                                                             aTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAAAAGAGGCAAATTg                                                                                                                                         >  1:394148/1‑234 (MQ=255)                                                                                                 cgtcatggtcactactcgctatactgtatgcatgaacagtatagcgagaaagccatcttaagcaatgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCa                                                                                                                                      <  2:818096‑M1/96‑1 (MQ=255)                                                                                                  ggtggtGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCAc                                                                                                                                     >  2:426540/1‑233 (MQ=255)                                                                                                              ggCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACa                                                                                                                                                    >  2:424767/1‑206 (MQ=255)                                                                                                                ccTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACaa                                                                                                                    >  1:279611/1‑236 (MQ=255)                                                                                                                    ccTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAAcc                                                                                                                                                                                <  2:146881/172‑1 (MQ=255)                                                                                                                         tCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTgc                                                                                                           <  1:426543/236‑1 (MQ=255)                                                                                                                           tACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTgg                                                                                                                                                                                        <  1:91912/157‑1 (MQ=255)                                                                                                                           tACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTgcg                                                                                                          <  1:808863/235‑1 (MQ=255)                                                                                                                            atgcatgaacagtatagcgagaaagccatcttaagcaatgaatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattctattatccggcgctaggaAACcctagagcc                                                                                                                                                                                                                          <  2:254096‑M1/12‑5 (MQ=255)                                                                                                                             cATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTgc                                                                                                           >  2:586316/1‑232 (MQ=255)                                                                                                                             cATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGAATGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTcag                                                                                                                                                              >  2:60046/1‑181 (MQ=255)                                                                                                                               tCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCAtt                                                                                                      <  1:531626/235‑1 (MQ=255)                                                                                                                                cGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCAc                                                                                                                                     >  1:688658/1‑203 (MQ=255)                                                                                                                                  ccTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAAt                                                                                                  >  1:803338/1‑236 (MQ=255)                                                                                                                                    tGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATg                                                                                                 <  1:574679/235‑1 (MQ=255)                                                                                                                                     cagtatagcgagaaagccatcttaagcaatgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAACCCTAGCGACTGACAATAAAAACACTAGCTTCAGTGTAAATTGGTATCaa                                                                                                                                                                                  <  2:709606‑M1/52‑1 (MQ=255)                                                                                                                                             tgGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGGATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATAGCAtgt                                                                                       >  1:273984/1‑236 (MQ=255)                                                                                                                                              ggCGCGCCCCCGTGAGCGAGACCGTGGTGGCAAGCGCTCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACt                                                                                                                                                                 <  2:214398/161‑1 (MQ=255)                                                                                                                                                cgcgcACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCGGGGTGGGGGCAGGCAACTCTAACGAATAACAATAAAAACTCGAGCTTc                                                                                                                                                                                                    >  2:770110/1‑124 (MQ=255)                                                                                                                                                     aCCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCttt                                                                               >  1:298770/1‑236 (MQ=255)                                                                                                                                                       ccGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGGCAGGAGTTCTGGGTGGCGGCAGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATGGACTCAGCAGGCGAACAGAGGCAAAt                                                                                                                                           <  1:72257/174‑1 (MQ=255)                                                                                                                                                       ccGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCa                                                                                                                                                                                                   <  1:196740/118‑1 (MQ=255)                                                                                                                                                        cGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTaa                                                                            <  1:115002/236‑1 (MQ=255)                                                                                                                                                          tGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGCGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTaaaa                                                                          >  1:625522/1‑236 (MQ=255)                                                                                                                                                                 atgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtaa                                                                                                                                                                                                                                    >  1:757124‑M1/74‑75 (MQ=255)                                                                                                                                                                  aCCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGcc                                                                                                                                       >  1:66954/1‑167 (MQ=255)                                                                                                                                                                    cGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGa                                                                                                                                                       >  2:765666/1‑149 (MQ=255)                                                                                                                                                                    cGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGag                                                                                              >  1:72640/1‑205 (MQ=255)                                                                                                                                                                     atacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGactact                                                                >  1:818099‑M1/70‑235 (MQ=255)                                                                                                                                                                         tggCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACtactac                                                              >  2:555341/1‑233 (MQ=255)                                                                                                                                                                            tcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCgg                                                        >  1:244658‑M1/63‑236 (MQ=255)                                                                                                                                                                              aGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTCCTTACAACTCAACTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCgg                                                        >  2:132280/1‑234 (MQ=255)                                                                                                                                                                              aGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGGAAATTGGTATCAAccc                                                                                                                                                                               >  2:172109/1‑115 (MQ=255)                                                                                                                                                                                 gcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCt                                                                                                                                  <  2:695114‑M1/100‑1 (MQ=255)                                                                                                                                                                                  gcgcgccAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGata                                                                                             >  2:835231/6‑193 (MQ=255)                                                                                                                                                                                  aTCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATaa                                                   <  1:586319/235‑1 (MQ=255)                                                                                                                                                                                    cACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATaa                                                   <  2:803335/233‑1 (MQ=255)                                                                                                                                                                                          ggcggcACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCACCCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCt                                                                                                             <  2:373078/169‑1 (MQ=255)                                                                                                                                                                                             ggcACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCAtt                                            >  1:31126/1‑231 (MQ=255)                                                                                                                                                                                              gcACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCa                                         >  2:135433/1‑233 (MQ=255)                                                                                                                                                                                                aCTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACa                                    <  1:405509/236‑1 (MQ=255)                                                                                                                                                                                                    ggCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATAAAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCtt                                                           >  1:616234/1‑209 (MQ=255)                                                                                                                                                                                                        ccTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACtt                            <  1:555344/236‑1 (MQ=255)                                                                                                                                                                                                              gcgcCAGGAGTTCGGGGTGGCGGCCGGCAACCCTAGCGACTGAAAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACtactac                                                              <  1:11504/196‑1 (MQ=255)                                                                                                                                                                                                                   aGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGGCAAAAg                    <  2:708769/233‑1 (MQ=255)                                                                                                                                                                                                                                  cggccggcAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGACAAAAGCATGGGCGTGTGAGACCg  <  1:424937/236‑1 (MQ=255)                                                                                                                                                                                                                                   gctaggtAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCAtt                                            >  1:750929‑M1/8‑193 (MQ=255)                                                                                                                                                                                                                                          AACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTCCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTaaaaaa                                                                        >  2:415886‑M1/1‑158 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                    CCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGGCAAAAGCATGGGCGTGTGAGACCG  >  AE015451/3409695‑3410155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.