New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3456325	29 (0.580)	3 (0.060)	3/316	NT	8.6%	coding (138/480 nt)	eco	Ecotin
	?	AE015451	= 3456502	37 (0.790)					intergenic (‑40/+16)	eco/hbdH	Ecotin/3‑hydroxybutyrate dehydrogenase

GTTGTAGCGCAGCAGGAAGCCATCGCCGACCACCGGCACGAAGGCCTCGGTCTTCTTGCCGTCCGGGCAGGCCATCAGCGTGCTGGCCGGGCCGCTGACGTTGTCCAGGCGGTAGTAATTGTAGCCCCAGCCTTCCAGGGTGTGTGCTTCCAGGTTGCCGCCCAGGCGCTGACGATTGCAGTCGACCTGCAGCGTCTTGCCAGCGAGGATTTCCAGTTTATAGGCCGACTCGTCGGCCTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3456082‑3456325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgggccTGGCGACGGTCGCGCATTCGTTTATCAGCAAGGAGGCCTTATGCGCCCTACCCCAATGACCGCGATTCTGGCCCTGAGCCTGGCCGCCGCCGCACCTGCGATGGCCGCCAGCCTGAAGGACATCGCGCCCTACCCCGAGGCGGAAAAAGGCTT  <  AE015451/3456502‑3456350                                                                                                                                                                                                                                                                                                                                                                                                               GTTGTAGCGCAGCAGGAAGCCATCGCCGACCACCGGCACGAAGGCCTCGGTCTTCTTGCCGTCCGGGCAGGCCATCAGCGTGCTGGCCGGGCCGCTGACGTTGTCCAGGCGGTAGTAATTGTAGCCCCAGCCTTCCAGGGTGTGTGCTTCCAGGTTGCCGCCCAGGCGCTGACGATTGCAGTCGACCTGCAGCGTCTTGCCAGCGAGGATTTCCAGTTTATAGGCCGACTCGTCGG                                                                                                                                                                   >  1:616389/1‑236                                                        TTGCCGTCCGGGCAGGCCTTCAGCGTGCTGGCCGGGCCGCTGACGTTGTCCAGGCGGTAGTAATTGTAGCCCCAGCCTTCCAGGGTGTGTGCTTCCAGGTTGCCGCCCAGGCGCTGACGATTGCAGTCGACCTGCAGCGTCTTGCCAGCGAGGATTTCCAGTTTATAGGCCGACTCGTCGGCCT                                                                                                                                                                <  2:287520/184‑1                                                                                                                                                   CTTCCAGGTTGCCGCCCAGGCGCTGACGATTGCAGTCGACCTGCAGCGTCTTGCCAGCGAGGATTTCCAGTTTATAGGCCGACTCGTCGGCCTGGGCCTGGCGACGGTCGCGCATTCGTTTATCAGCAAGGAGGCCTTATGCGCCCTACCCCAATGACCGCGATTCTGGCC                                                                                  >  1:596634/1‑171                                                                                                                                                   CTTCCAGGTTGCCGCCCAGGCGCTGACGATTGCAGTCGACCTGCAGCGTCTTGCCAGCGAGGATTTCCAGTTTATAGGCCGACTCGTCGGCCTGGGCCTGGCGACGGTCGCGCATTCGTTTATCAGCAAGGAGGCCTTATGCGCCCTACCCCAATGACCGCGATTCTGGCC                                                                                  <  2:596631/171‑1                                                                                                                                                                                              CAGCGTCTTGCCAGCGAGGATTTCCTGTTTATAGGCCGACTCGTCGGCCTGGGCCTGGCGACGGTCGCGCATTCGTTTATCAGCAAGGAGGCCTTATGCGCCCTACCCCAATGACCGCGAT                                                                                         <  2:61081/121‑1                                                                                                                                                                                                                                           GGCCTGGGCCTGGCGACGGTCGCGCATTCGTTTATCAGCAAGGAGGCCTTATGCGCCCTACCCCAATGACCGCGATTCTGGCCCTGAGCCTGGCCGCCGCCGCACCTGCGCGGGCCGCCAGCCTGAAGGACATCGCGCCCTACCCCGAGGCGGAAAAAGGCTT  >  1:128898/1‑163                                                                                                                                                                                                                                                GGGCCTGGCGACGGTCGCGCATTCGATTATCAGCAAGGAGGCCTTATGCGCCCTACCCCAATGACCGCGATTCTGGCCCTGAGCCTGGCCGCCGCC                                                                >  2:735462/1‑96                                                                                                                                                                                                                                                                                                                                                                                                               GTTGTAGCGCAGCAGGAAGCCATCGCCGACCACCGGCACGAAGGCCTCGGTCTTCTTGCCGTCCGGGCAGGCCATCAGCGTGCTGGCCGGGCCGCTGACGTTGTCCAGGCGGTAGTAATTGTAGCCCCAGCCTTCCAGGGTGTGTGCTTCCAGGTTGCCGCCCAGGCGCTGACGATTGCAGTCGACCTGCAGCGTCTTGCCAGCGAGGATTTCCAGTTTATAGGCCGACTCGTCGGCCTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3456082‑3456325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgggccTGGCGACGGTCGCGCATTCGTTTATCAGCAAGGAGGCCTTATGCGCCCTACCCCAATGACCGCGATTCTGGCCCTGAGCCTGGCCGCCGCCGCACCTGCGATGGCCGCCAGCCTGAAGGACATCGCGCCCTACCCCGAGGCGGAAAAAGGCTT  <  AE015451/3456502‑3456350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.