New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3456325	29 (0.580)	3 (0.060)	3/316	NT	8.6%	coding (138/480 nt)	eco	Ecotin
	?	AE015451	= 3456502	37 (0.790)					intergenic (‑40/+16)	eco/hbdH	Ecotin/3‑hydroxybutyrate dehydrogenase

TCGTCGGCCTGGGCCGGCAGGTGGATAACCTGCCGGGTGAAGCCTTTTTCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAG  >  AE015451/3456311‑3456724                                                                                                                                                                                                |                                                                                                                                                                                                                               tcgtcgGCCTGGGCCGGCAGGTGGATAACCTGCCGGGTGAAGCCTTTTTCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGa                                                                                                                                                                                       >  2:692891/1‑233 (MQ=255)   gtcgGCCTGGGCCGGCAGGTGGATAACCTGCCGGGTGAAGCCTTTTTCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTc                                                                                                                                                                                  >  1:440685/1‑236 (MQ=255)                                    ggTGAAGCCTTTTTCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCg                                                                                                                                                 >  1:888335/1‑236 (MQ=255)                                        aaGCCTTTTTCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCCGCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAggcccaggcc                                                                                                                                                                                                                      >  1:128898‑M2/1‑153 (MQ=255)                                           ccTTTTTCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCCTCGACGTTCCACGCGGCGCCGCGAACCTgg                                                                                                                                                             >  1:253469/1‑217 (MQ=255)                                           ccTTTTTCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGcac                                                                                                                                           >  1:371595/1‑235 (MQ=255)                                             tttttCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAg                                                                                                                                         <  1:692894/235‑1 (MQ=255)                                              ttttCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGCCCGTCGCCAGGCCCAGGCCGCCCGTccc                                                                                                                                                                                                             >  2:85251/1‑164 (MQ=255)                                               tgtCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGaaa                                                                                                                                      <  1:69075/234‑1 (MQ=255)                                                   cGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAaga                                                                                                                                    <  2:799062/234‑1 (MQ=255)                                                      cTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCcgcg                                                                                                                                                                    <  2:820342/199‑1 (MQ=255)                                                                     gATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGgtgt                                                                                                                >  1:639593/1‑236 (MQ=255)                                                                       tGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTc                                                                                                              >  1:865685/1‑236 (MQ=255)                                                                        gTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGcc                                                                                                                                                    >  1:260143/1‑197 (MQ=255)                                                                        gTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCg                                                                                                             >  1:637750/1‑236 (MQ=255)                                                                                ggCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCa                                                                                                                         <  2:880823/216‑1 (MQ=255)                                                                                       ggcCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAag                                                                                                                                     >  2:614439/1‑197 (MQ=255)                                                                                        gcCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGccaccag                                                                                                                                                                                          >  2:320992/1‑142 (MQ=255)                                                                                        gcCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCCACGCTCCAGGCGccgccg                                                                                                                                                                      >  2:24906/1‑163 (MQ=255)                                                                                         ccATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCCCACCGAgg                                                                                                                   >  2:552325/1‑213 (MQ=255)                                                                                            tCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCAcc                                                                                                                       <  2:391690/206‑1 (MQ=255)                                                                                                   tGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGaactgtctctt                                                                                         >  1:634070/1‑220 (MQ=255)                                                                                                   tGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGc                                                                                  <  1:641097/236‑1 (MQ=255)                                                                                                      ggcggcggcCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAATCGAATGCGCGACCGTCGCCAggccc                                                                                                                                                                                                                           >  2:735462‑M2/1‑91 (MQ=255)                                                                                                        cggcggcCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCt                                                                                                                                               >  1:322866/1‑170 (MQ=255)                                                                                                                   cTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCGCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCAcc                                                                                                                       <  2:28642/183‑1 (MQ=255)                                                                                                                        ggCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAggcccaggccgacgagtcggcctataaactggaaatcctcgctggcaagacgctgcaggtcgactgcaatcgtcagcgcctgggcggcaacctggaag                                                                                                                              >  1:596634‑M2/1‑73 (MQ=255)                                                                                                                        ggCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAggcccaggccgacgagtcggcctataaactggaaatcctcgctggcaagacgctgcaggtcgactgcaatcgtcagcgcctgggcggcaacctggaag                                                                                                                              <  2:596631‑M2/171‑99 (MQ=255)                                                                                                                              agtCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTg                                                                                                       <  1:893020/186‑1 (MQ=255)                                                                                                                               aTCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAggcccaggccgacgagtcggcctataaacaggaaatcctcgctggcaagacgctg                                                                                                                                                                         <  2:61081‑M2/121‑56 (MQ=255)                                                                                                                                      tCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGCTAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGTCACCATCGACGGTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGcaca                                                                                                                                          >  2:497302/1‑145 (MQ=255)                                                                                                                                        atgggggTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGAt                                             <  1:141178/233‑1 (MQ=255)                                                                                                                                           ggggTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGgcgc                                                                                                                                                                        >  2:204024/1‑110 (MQ=255)                                                                                                                                                     gcATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCGACCGGCCTCGCTGCACAGAAAGAGTACCAGcg                                                                                                                           >  2:6289/1‑144 (MQ=255)                                                                                                                                                       aTAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGCTTTTCTGCcagca                                                                     >  2:674309/1‑197 (MQ=255)                                                                                                                                                        tAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGgtgt                                                                                                                <  2:634067/153‑1 (MQ=255)                                                                                                                                                         aaGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGCAAGAGGACCAGCTCACCGAg                                                                                                                    >  1:197308/1‑148 (MQ=255)                                                                                                                                                         aaGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCGACCGGCCt                                                                                                                                                   >  2:275322/1‑117 (MQ=255)                                                                                                                                                                   tGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGtg                                                              >  2:414922/1‑192 (MQ=255)                                                                                                                                                                              gAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTg        >  1:55577/1‑235 (MQ=255)                                                                                                                                                                                    gcgACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCAc     <  1:85251/232‑1 (MQ=255)                                                                                                                                                                                     cgACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAg  <  2:440682/234‑1 (MQ=255)                                                                                                                                                                                                |                                                                                                                                                                                                                               TCGTCGGCCTGGGCCGGCAGGTGGATAACCTGCCGGGTGAAGCCTTTTTCCGCCTCGGGGTAGGGCGCGATGTCCTTCAGGCTGGCGGCCATCGCAGGTGCGGCGGCGGCCAGGCTCAGGGCCAGAATCGCGGTCATTGGGGTAGGGCGCATAAGGCCTCCTTGCTGATAAACGAATGCGCGACCGTCGCCAGGCCCAGGCCGCCCGTCACTGGGCCAACCAGCCACCATCGACGTTCCAGGCGGCGCCGCGAACCTGGCTACCGGCCTCGCTGCACAGAAAGAGTACCAGCTCACCGAGGTGTTCGGGGGTGACGAAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAG  >  AE015451/3456311‑3456724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.