New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4385743	60 (1.200)	4 (0.080)	4/318	NT	6.7%	coding (169/387 nt)	PP_3861	Phage FluMu protein gp46
	?	AE015451	= 4385845	55 (1.170)					coding (67/387 nt)	PP_3861	Phage FluMu protein gp46

CATTGATCAGACTCCAGGTATCTTCAAAAGCAAGCTTGAGGGTTTCACCGTTCAGCTCTGTCAGTAGCACCATCAGGTTGAGCCGGTCATTGCCCAAGCGCTCCGCCGTTACGGTAACGGTGGTAACAATCTCGTCATCGATCATCCAGCGCAGGGCCTCTTCGGCGTACTCCCGCGCATCGCGCAGGGTGTCATCGGTCAGCGCGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4385533‑4385743 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcggcgTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGTGGTGGGGCGACTGTGCGCCGAGCGAGGCCGGCGATCAGATCGGTTCACGGCTGTGGCTGCTGCACCGCCGCGCGCTGACCGATGACACCCTGCGCGATGCGCGGGAGTACGCCGAAGAGGCCCTGCGCTGGATGATCGATGACGAGATTGTTACCACCGTTACCGTAACGGCGGAGCGCTTGGGCAATGACCG  <  AE015451/4385845‑4385616                                                                                                                                                                                                                                                                                                                                                                                                                                                           CATTGATCAGACTCCAGGTATCTTCAAAAGCAAGCTTGAGGGTTTCACCGTTCAGCTCTGTCAGTAGCACCATCAGGTTGAGCCGGTCATTGCCCAAGCGCTCCGCCGTTACGGTAACGGTGGTAACAATCTCGTCATCGATCATCCAGCGCAGGGCCTCTTCGGCGTACTCCCGCGCATCGCGCAGGGTGTCATCGGTCAGCG                                                                                                                                                                                                                                               >  2:851133/1‑204                        TCAAAAGCAAGCTTGAGGGTTTCACCGTTCAGCTCTGTCAGTAGCACCATCAGGTTGAGCCGGTCATTGCCCAAGCGCTCCGCCGTTACGGTAACGGTGGTAACAATCTCGTCATCGATCATCCAGCGCAGGGCCTCTTCGGCGTACTCCCGCGCATCGCGCAGGGTGTCATCGGTCAGC                                                                                                                                                                                                                                                <  1:708082/180‑1                                                                                 ccCCGGTCATTGCCCAAGCGCTCCGCCGTTACGGTAACGGTGGTAACAATCTCGTCATCGATCATCCAGCGCAGGGCCTCTTCGGCGTACTCCCGCGCATCGCGCAGGGTGTCATCGGTCAGC                                                                                                                                                                                                                                                <  2:90173/121‑1                                                                                                                                                         AGGGCCTCTTCGGCGTACTCCCGCGCATCGCGCAGGGTGTCATCGGTCAGCGCGCGGCGTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGGGGGGGGGCGACTGTGCGCCGAGCGAGGCCGG                                                                                                                                                                    >  1:242298/1‑127                                                                                                                                                              CTCTTCGGCGTACTCCCGCGCATCGCGCAGGGTGTCATCGGTCAGCGCGCGGCGTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGGGGT                                                                                                                                                                                                >  2:259257/1‑94                                                                                                                                                                              CGCGCATCGCGCAGGGTGTCATCGGTCAGCGCGCGGCGTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGTGGTGGGGCGACTGTGCGCCGAGCGAGGCCGGCGATCAGATCGGTTCACGGCTGTGGCTGCTGCACCGCCGCGCGCTGACCGATGACACCCTGCGCGATGCGCGGGAGTACGCCGAAGAGGCCCTGCGCTGGATGATCGATGACGAGATTGTTACCA                                       >  2:862514/1‑231                                                                                                                                                                                     CGCGCAGGGTGTCATCGGTCAGCGCGCGGCGTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGGGGTGGGGGGACTGTGCGCCGg                                                                                                                                                                              >  2:85742/1‑88                                                                                                                                                                                                            GCGCGGCGTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGTGGTGGGGCGACTGTGCGCCGAGCGAGGCCGGCGATCAGATCGGTTCACGGCTGTGGCTGCTGCACCGCCGCGCGCTGACCGATGACACCCTGCGCGATGCGCGGGAGTACGCCGAAGAGGCCCTGCGCTGGATGATCGATGACGAGATTGTTACCACCGTTACCGTAACGGCGGAGCGCTTGGGCAATGAC    >  1:620197/1‑236                                                                                                                                                                                                               CGGCGTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGTGGTGGGGCGACTGTGCGCCGAGCGAGGCCGGCGATCAGATCGGTTCACGGCTGTGGCTGCTGCACCGCCGCGCGCTGACCGATGACACCCTGCGCGATGCGCGGGAGTACGCCGAAGAGGCCCTGCGCTGGATGATCGATGACGA                                                  <  2:844131/187‑1                                                                                                                                                                                                               CGGCGTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGTGGTGGGGCGACTGTGCGCCGAGCGAGGCCGGCGATCAGATCGGTTCACGGCTGTGGCTGCTGCACCGCCGCGCGCTGACCGATGACACCCTGCGCGATGCGCGGGAGTACGCCGAAGAGGCCCTGCGCTGGATGATCGATGACGA                                                  <  2:939202/187‑1                                                                                                                                                                                                                GGCGTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGTGGTGGGGCGACTGTGCGCCGAGCGAGGCCGGCGATCAGATCGGTTCACGGCTGTGGCTGCTGCACCGCCGCGCGCTGACCGATGACACCCTGCGCGATGCGCGGGAGTACGCCGAAGAGGCCCTGCGCTGGATGATCGATGACGAGATTGTTACCACCGTTACCGTAACGGCGGAGCGCTTGGGCAATGACCG  >  2:337238/1‑234                                                                                                                                                                                                                                                                                                                                                                                                                                                           CATTGATCAGACTCCAGGTATCTTCAAAAGCAAGCTTGAGGGTTTCACCGTTCAGCTCTGTCAGTAGCACCATCAGGTTGAGCCGGTCATTGCCCAAGCGCTCCGCCGTTACGGTAACGGTGGTAACAATCTCGTCATCGATCATCCAGCGCAGGGCCTCTTCGGCGTACTCCCGCGCATCGCGCAGGGTGTCATCGGTCAGCGCGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4385533‑4385743 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcggcgTCTGACGATGCTTTGGACGATGCCGACCGGCAGGGGTGGTGGGGCGACTGTGCGCCGAGCGAGGCCGGCGATCAGATCGGTTCACGGCTGTGGCTGCTGCACCGCCGCGCGCTGACCGATGACACCCTGCGCGATGCGCGGGAGTACGCCGAAGAGGCCCTGCGCTGGATGATCGATGACGAGATTGTTACCACCGTTACCGTAACGGCGGAGCGCTTGGGCAATGACCG  <  AE015451/4385845‑4385616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.