New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3398276 =	45 (0.900)	7 (0.150)	6/320	NT	14.8%	coding (757/819 nt)	PP_3002	shikimate dehydrogenase‑related enzyme
	?	AE015451	3398411 =	38 (0.800)					coding (69/438 nt)	aroQ‑III	3‑dehydroquinate dehydratase 3, type II

GCGCTGGAAGGGCAATCGTTCGACATCGTCGTCAACGCCACCTCGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGC  >  AE015451/3398045‑3398510                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           gcgcTGGAAGGGCAATCGTTCGACATCGTCGTCAACGCCACCTCGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGgc                                                                                                                                                                                                                                         >  1:400518/1‑235 (MQ=255)  cgcTGGAAGGGCAATCGTTCGACATCGTCGTCAACGCCACCTCGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCtggtgg                                                                                                                                                                                                                                          <  2:400515/233‑1 (MQ=255)    cTGGAAGGGCAATCGTTCGACATCGTCGTCAACGCCACCTCGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCgg                                                                                                                                                                                                                                     >  1:893342/1‑236 (MQ=255)                tCGTTCGACCTCGTCGTCAACGCCACCTCGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCtggtg                                                                                                                                                                                                                                           <  1:128308/218‑1 (MQ=255)                                                      gACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGacacac                                                                                                                                                                                                                    >  1:264996/1‑203 (MQ=255)                                                                  accggcattgatcagcacggcatccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                                                                        >  1:820489‑M1/167‑235 (MQ=255)                                                                             cggcggATGTGCTGGGCGAGGCGGCCTTGGCCTACGCGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATg                                                                                                                                                             <  1:597626/235‑1 (MQ=255)                                                                             cGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGt                                                                                                                                                            >  1:365335/1‑236 (MQ=255)                                                                               gCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCggg                                                                                                                                                                                                                                    <  2:458110/162‑1 (MQ=255)                                                                                      ggCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGAtgc                                                                                                                                                    <  1:667068/234‑1 (MQ=255)                                                                                       atccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                                                                        >  1:315546‑M1/146‑214 (MQ=255)                                                                                         tGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCGCGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCgg                                                                                                                                                                                                                                     <  2:196717/151‑1 (MQ=255)                                                                                         ccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGt                                                                                                                                                                     <  1:644315‑M1/72‑1 (MQ=255)                                                                                         ccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGt                                                                                                                                                                     >  2:644312‑M1/144‑215 (MQ=255)                                                                                          gggCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGAtgct                                                                                                                                                   <  2:557581/232‑1 (MQ=255)                                                                                                ggcggcCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGCTGGTCGCCAATGTACTGATGCTGCATGGCa                                                                                                                                           >  1:73456/1‑234 (MQ=255)                                                                                                ggcggcCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTGTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGc                                                                                                                                            <  1:790710/233‑1 (MQ=255)                                                                                                   ggcCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGAtgct                                                                                                                                                   >  1:353088/1‑223 (MQ=255)                                                                                                    gcCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATg                                                                                                                                              <  2:660253/227‑1 (MQ=255)                                                                                                              aCGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGACAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCATTCAGCTGACGATTCCCtt                                                                                                                                                                                     <  1:657154/178‑1 (MQ=255)                                                                                                                 ggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTc                                                                                                                                                                           >  1:57085‑M1/120‑185 (MQ=255)                                                                                                                  gCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCgg                                                                                                                        >  1:696394/1‑235 (MQ=255)                                                                                                                         tgtGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGcgcg                                                                                                                <  1:145021/234‑1 (MQ=255)                                                                                                                         tATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGAtt                                                                                                                                                                                          >  1:563294/1‑162 (MQ=255)                                                                                                                         tATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGAtt                                                                                                                                                                                          <  2:563291/162‑1 (MQ=255)                                                                                                                         tATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGcgcg                                                                                                                >  1:292750/1‑236 (MQ=255)                                                                                                                                  ggCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCcg                                                                                                           <  1:99354/232‑1 (MQ=255)                                                                                                                                  gcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGAc                                                                                                                                                                                              >  2:388504‑M1/103‑149 (MQ=255)                                                                                                                                   gCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCCTGCTGGGGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACCCGTGCg                                                                                                                                                                                                               >  2:114839/1‑131 (MQ=255)                                                                                                                                   gCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCgcgc                                                                                                        >  1:520074/1‑234 (MQ=255)                                                                                                                                          gCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                                                                        <  1:52531/163‑1 (MQ=255)                                                                                                                                                 cTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCa                                                                                                      <  1:843806/222‑1 (MQ=255)                                                                                                                                                  tGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCA‑GCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGGGCGGCCCGACACACGTGCGGt                                                                                                                                                                                                             >  2:199380/1‑117 (MQ=255)                                                                                                                                                       cTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATgg                                                                                                                                             >  1:205103/1‑177 (MQ=255)                                                                                                                                                       cTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATgg                                                                                                                                             <  2:205101/177‑1 (MQ=255)                                                                                                                                                       cTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTgg                                                                                  >  1:121044/1‑236 (MQ=255)                                                                                                                                                            tCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGcc                                                                                >  2:869861/1‑233 (MQ=255)                                                                                                                                                              gcgAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAg                                                                                                                                                                              >  2:406069/1‑137 (MQ=255)                                                                                                                                                              gcgAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACAt                                                                           >  1:679647/1‑236 (MQ=255)                                                                                                                                                               ggAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGt                                                                                                                                                                                                             <  2:2650/104‑1 (MQ=255)                                                                                                                                                                gAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCcg                                                                                                           <  2:689085/202‑1 (MQ=255)                                                                                                                                                                  ctgtgcccccagctccccgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGc                                                                                                                                            >  2:626076‑M1/71‑167 (MQ=255)                                                                                                                                                                      ggCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGt                                                                                                                                                                     <  1:88983/138‑1 (MQ=255)                                                                                                                                                                         ggggCTCGCCGGGCGGATGGCGTGGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                                                                        <  2:796778/130‑1 (MQ=255)                                                                                                                                                                                 ccTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTg                                                                                                                                                        <  2:449476/140‑1 (MQ=255)                                                                                                                                                                                   tGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGccc                                                       >  1:688919/1‑235 (MQ=255)                                                                                                                                                                                    ggCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGa                                                                                                                                                                                               <  2:274314/98‑1 (MQ=255)                                                                                                                                                                                    ggCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGa                                                                                                                                                                                               >  1:274317/1‑98 (MQ=255)                                                                                                                                                                                         aTGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGcc                                                                                <  2:320062/204‑1 (MQ=255)                                                                                                                                                                                            gCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCgagga                                             >  1:361336/1‑236 (MQ=255)                                                                                                                                                                                                cGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGAc                                                                                       >  2:687957/1‑190 (MQ=255)                                                                                                                                                                                                  gCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCGCAGCg                                                                                         <  2:584372/186‑1 (MQ=255)                                                                                                                                                                                                                 aGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAAt                                                                                                                                                              <  2:200713/102‑1 (MQ=255)                                                                                                                                                                                                                     cgccgAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTTCGGTGATCAATCAGCTGACGATTCCCTTGGAGTCGGTCGATGGTCGCCAATGTAc                                                                                                                                                          >  2:1382/1‑102 (MQ=255)                                                                                                                                                                                                                       ccgCGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCgatgtcggc                                         <  2:365332/213‑8 (MQ=255)                                                                                                                                                                                                                                       gtggCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGgc  <  1:260248/236‑1 (MQ=255)                                                                                                                                                                                                                                       gtggCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCGGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCaa                                                                                                                     <  1:639784/121‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           GCGCTGGAAGGGCAATCGTTCGACATCGTCGTCAACGCCACCTCGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGC  >  AE015451/3398045‑3398510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.