New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3398276 = | 45 (0.900) | 7 (0.150) | 6/320 | NT | 14.8% | coding (757/819 nt) | PP_3002 | shikimate dehydrogenase‑related enzyme |
? | AE015451 | 3398411 = | 38 (0.800) | coding (69/438 nt) | aroQ‑III | 3‑dehydroquinate dehydratase 3, type II |
CTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCAT > AE015451/3398195‑3398620 | cTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTgg > 1:121044/1‑236 (MQ=255) tCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGcc > 2:869861/1‑233 (MQ=255) gcgAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACAt > 1:679647/1‑236 (MQ=255) tGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGccc > 1:688919/1‑235 (MQ=255) aTGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGcc < 2:320062/204‑1 (MQ=255) gCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCgagga > 1:361336/1‑236 (MQ=255) cGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGAc > 2:687957/1‑190 (MQ=255) gCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCGCAGCg < 2:584372/186‑1 (MQ=255) ccgCGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCgatgtcggc < 2:365332/213‑8 (MQ=255) gtggCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGgc < 1:260248/236‑1 (MQ=255) GGGTGCGGCCCGACACCCGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCAtgtg > 1:185460‑M1/1‑236 (MQ=255) ggCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCa < 1:89821/155‑1 (MQ=255) cGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCg < 2:542628/181‑1 (MQ=255) cGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCg > 1:542631/1‑181 (MQ=255) atcaatcaGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGTGCGCCATGTGCGAGCGCATCCATCAGGCCTATGCgg > 1:160047/1‑236 (MQ=255) gccatgcagcatcagtacattggcgaccatcgacctactccaagggaatcgtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGGGGAGCTGGGGGCACAg > 2:626076‑M2/98‑167 (MQ=255) cGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACAGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGccc > 2:40109/1‑136 (MQ=255) gATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCAtgtg < 2:696391/196‑1 (MQ=255) aTTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGcatcc < 2:892983/206‑1 (MQ=255) cTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCAGCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAgc < 2:723709/195‑1 (MQ=255) aGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAgg > 2:490370/1‑121 (MQ=255) aGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAgg < 1:490373/121‑1 (MQ=255) accatcgacctactccaagggaatcgtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTgg < 1:644315‑M2/143‑1 (MQ=255) accatcgacctactccaagggaatcgtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTgg > 2:644312‑M2/73‑215 (MQ=255) cGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGc > 1:141852/1‑106 (MQ=255) cGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCt < 2:679644/223‑1 (MQ=255) gATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGCGCAACTTCGAGGgc > 2:267420/1‑169 (MQ=255) gATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCggg > 2:820650/1‑218 (MQ=255) gATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCa > 1:67519/1‑227 (MQ=255) atcgacctactccaagggaatcgtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGAt > 1:315546‑M2/70‑214 (MQ=255) atcgacctactccaagggaatcgtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGt > 1:820489‑M2/70‑235 (MQ=255) gacctactccaagggaatcgtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGcatcc > 1:57085‑M2/67‑185 (MQ=255) cAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGAccc > 1:150559/1‑236 (MQ=255) aaTGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACATCGAGGGCGCCTTGTGCGAGCGcat < 1:494754/176‑1 (MQ=255) aaTGTACGGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCt < 1:852708/229‑1 (MQ=255) gATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGAccc > 2:558367/1‑227 (MQ=255) gATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGAccc < 1:558370/227‑1 (MQ=255) gtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGgcgc > 2:388504‑M2/48‑149 (MQ=255) cATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCGATCAGGCCTATGAGGAACGGGTg > 2:825972/1‑186 (MQ=255) ggCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGt > 2:452472/1‑191 (MQ=255) tCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCAt > 2:719153/1‑215 (MQ=255) acaacaTGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCagag < 2:710813/118‑1 (MQ=255) acaacaTGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCagag > 1:710816/1‑118 (MQ=255) acaacaTGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAAt > 2:545516/1‑191 (MQ=255) aTGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGCGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGCGCTGATCAGTGCCGGTGcc > 1:217117/1‑195 (MQ=255) ggCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCAGTACAGCTACGGCATTCGTGATGCGTTGGCCAt > 2:567170/1‑230 (MQ=255) | CTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCAT > AE015451/3398195‑3398620 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |