New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1902261	38 (0.760)	4 (0.080)	4/320	NT	9.6%	coding (2812/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	AE015451	= 1902441	39 (0.820)					coding (2992/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase

CGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGG  >  AE015451/1902218‑1902663                                                                                                                                                                                                                                |                                                                                                                                                                                                                               cGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGgcgccag                                                                                                                                                                                                                         >  2:655066‑M2/1‑224 (MQ=255)           cTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGa                                                                                                                                                                                                                   >  2:616052/1‑227 (MQ=255)                     tGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTc                                                                                                                                                                                                >  1:787570/1‑236 (MQ=255)                                cGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGGCAGCTGGACTTCGATCTGggcc                                                                                                                                                                                      >  2:572721/1‑234 (MQ=255)                                 gCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGggcgg                                                                                                                                                                                     >  1:625430/1‑235 (MQ=255)                                   ctgctgGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAAcc                                                                                                                                                                                                               <  2:365809/207‑1 (MQ=255)                                             gggTGGCCTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCCGCAGCGGCTTCAg                                                                                                                                                                         <  1:494770/235‑1 (MQ=255)                                                tGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTAc                                                                                                                                                                     <  1:732011/236‑1 (MQ=255)                                                            ccGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGAt                                                                                                                                                         >  1:26291/1‑236 (MQ=255)                                                                                                 gTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGc                                                                                                                                                            <  2:924650/196‑1 (MQ=255)                                                                                                     ttGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCtggtgg                                                                                                                 >  1:730638/1‑235 (MQ=255)                                                                                                      tGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGaa                                                                                                               <  1:423704/236‑1 (MQ=255)                                                                                                         cTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGaa                                                                                                               <  2:795126/233‑1 (MQ=255)                                                                                                                    aCTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCgg                                                                                                                          >  1:928697/1‑211 (MQ=255)                                                                                                                    aCTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCgg                                                                                                                          <  2:928694/211‑1 (MQ=255)                                                                                                                    aCTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCt                                                                                                 >  1:645684/1‑236 (MQ=255)                                                                                                                           cggcgCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCtggt                                                                                                                   >  1:918002/1‑211 (MQ=255)                                                                                                                              cgcCATCTCCGGCGAGTGAACCTGCACTCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAgctg                                                                                                         >  2:610267/1‑218 (MQ=255)                                                                                                                                     tcCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTGTGGCCGCGCAACTGCCCGGCCCTGGTGGAAGCGCGGCTGACGCTg                                                                                                >  1:823849/1‑220 (MQ=255)                                                                                                                                      ccGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACt                                                                                                                                <  2:358619/187‑1 (MQ=255)                                                                                                                                                      cACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCATCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCtt                                                               <  1:320278/236‑1 (MQ=255)                                                                                                                                                              tCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGcc                                                                                                                        >  1:244669/1‑171 (MQ=255)                                                                                                                                                               cGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTc                                                                                       >  1:780755/1‑203 (MQ=255)                                                                                                                                                                  ccTTCAGCAAGCAGCACCCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGgcgccag                                                                                                                                                                                                                         >  2:84416‑M2/1‑63 (MQ=255)                                                                                                                                                                    ttCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGCCGAGCTTAAAGGTCAtcg                                                    >  2:655146/1‑231 (MQ=255)                                                                                                                                                                        gcaagcaGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGgcgccagcaggcgatgccctcccagctcggccaggcgctggtcgagcttgcggccaaaaccgcagaactggtcgtaactggagtcgcccagggccagtacggcatagggcagcccggcgcagtgagcgccctcctcgccctgcaaagcctgccagaaggccgcgccgctgtcgggcgc                                              <  1:885097‑M2/235‑179 (MQ=255)                                                                                                                                                                                     cTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAgct                                                                                                          <  2:71603/162‑1 (MQ=255)                                                                                                                                                                                                ccGTACTGGAAAACCGCCTGCTCAATGGCCCCGgcgccagcaggcgatgccctcccagctcggccaggcgctggtcgagcttgcggc                                                                                                                                                                          <  1:403555‑M2/87‑55 (MQ=255)                                                                                                                                                                                                ccGTACTGGAAAACCGCCTGCTCAATGGCCCCGgcgccagcaggcgatgccctcccagctcggccaggcgctggtcgagcttgcggc                                                                                                                                                                          >  2:403552‑M2/1‑33 (MQ=255)                                                                                                                                                                                                ccGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCt                                                                                        >  2:32114/1‑169 (MQ=255)                                                                                                                                                                                                 cGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGc                          <  1:389346/230‑1 (MQ=255)                                                                                                                                                                                                 cGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGca                     >  1:812914/1‑235 (MQ=255)                                                                                                                                                                                                      tGGAAAGCCGCCGGCTAAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGc                                                                                                                                                                                 <  2:193426/74‑1 (MQ=255)                                                                                                                                                                                                      tGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCcgcg                                                                                                                                     <  2:244667/118‑1 (MQ=255)                                                                                                                                                                                                         aaaaCCGCCTGCTCAATGGCCCCGgcgccagcaggcgatgccctcccagctcggccaggcgctggtcgagcttgcggccaaaaccgcagaactggtcgtaactggagtcgcccagggccagtacggcatagggcagcccggcgcagtgagcgccctcctcgccctgcaaagcctgccagaaggccgcgccgccgtcggg                                                 <  2:233716‑M2/199‑176 (MQ=255)                                                                                                                                                                                                           aaCCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTgg              <  2:730635/232‑1 (MQ=255)                                                                                                                                                                                                            cccGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGc                          <  1:322622/218‑1 (MQ=255)                                                                                                                                                                                                            cccGCCTGCTCAAGGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGc                                                                 <  1:537415/179‑1 (MQ=255)                                                                                                                                                                                                              cGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGcc                                                                                                                                                                                                           <  1:845620/40‑1 (MQ=255)                                                                                                                                                                                                              cGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGcc                                                                                                                                                                                                           >  2:845617/1‑40 (MQ=255)                                                                                                                                                                                                                ccTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGCGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGc                                                                 >  2:18960/1‑176 (MQ=255)                                                                                                                                                                                                                   gCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAg   >  1:250750/1‑235 (MQ=255)                                                                                                                                                                                                                     tCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAgg  >  1:453961/1‑234 (MQ=255)                                                                                                                                                                                                                     tCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCCATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAg                       >  2:227696/1‑213 (MQ=255)                                                                                                                                                                                                                           gCCCGGGCGCGAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGc                                                   <  2:289164/179‑1 (MQ=255)                                                                                                                                                                                                                           gCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTgg              <  1:616055/216‑1 (MQ=255)                                                                                                                                                                                                                           agcccGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAgg                                                                             >  2:144941/3‑153 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                               CGACCAGCGCCTGGCCGAGCTGGGAGGGCATCGCCTGCTGGCGCGGGTGGACTGCGAGCCCGACTTCGACGAAGCCTTTGCTGGCTGGCTCGAAGCGTTATTGCCTGCACTGGGCACTGCCGCGGCGCCATCTCCGGCGAGTGAACCTGCACCCGTATCGGCCTTCAGCAAGCAGCAACCCTGGATGGCCACCGTACTGGAAAACCGCCTGCTCAATGGCCCCGGCGCCAGCAAGGAAACCCGCCAGCTGGTCTTCGATCTGGGCGGCAGCGGCTTCAGTTACGCTGCCGGCGATGCCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGG  >  AE015451/1902218‑1902663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.