| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 204618 = | 0 (0.000) | 4 (0.050) +CCGGCGTACCTGGCT |
4/326 | NT | 100% | coding (10124/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | AE015451 | 207918 = | NA (NA) | coding (13424/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
CGCTGGTTTCACCGGCCTTGATGGTGACCTGGGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/204785‑204618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAA > AE015451/207918‑208014 ||||||||||||||| CGCTGGTTTCACCGGCCTTGATGGTGACCTGGGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCCGGCGTACCTGt > 1:578446/1‑180 ATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACCGTGACGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCCGGCGTcc > 2:16844/1‑141 ACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCC > 1:1474479/1‑116 aCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTCGACGTTCTCGGCTACCGCAGTCTGGTCGGCCGTGATGGTGACCTTCACCAGGTCGCCCTCGTTGCCCGGCGCACCc > 2:51426/2‑119 TTGACGTGAACAGTGAAGGTCGGTTTGCCGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGTTACCGACGAGCCAGGT < 2:683527/129‑1 GATGGTGACCTTGACCAGGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTCGGGTACCGACTAGCCAGGTACGCCGGGCAACGAAGGCGAC > 1:423296/1‑91 CCTTGACCAGGTCGCCTTCGTTGCCCGGCGTACCTG > 1:1433411/1‑36 CCTTGACCAGGTCGCCTTCGTTGCCCGGCGTACCTG < 2:1433408/36‑1 TTGACCAGGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTC > 1:856510/1‑41 TTGACCAGGTCGCCTTCGTTGCCCGGCGTACCTGGCTCGTC < 2:856508/41‑1 GCCTTCGTTGCCCGGCGTACCTGGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGCCCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAA < 2:1146866/123‑1 GCCTTCGTTGCCCGGCGTACCTGGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAA > 1:1146869/1‑123 ||||||||||||||| CGCTGGTTTCACCGGCCTTGATGGTGACCTGGGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTCGCCTTCGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/204785‑204618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAA > AE015451/207918‑208014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |