New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	204618 =	0 (0.000)	4 (0.050) +CCGGCGTACCTGGCT	4/326	NT	100%	coding (10124/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	207918 =	NA (NA)					coding (13424/26049 nt)	PP_0168	putative surface adhesion protein

GCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCG  >  AE015451/204506‑204785                                                                                                                 |                                                                                                                                                                        ttgacgttctcggccaccgaagtctggtcggctgtgatggtgaccttgaccaggtcgccttcgttgcccggcgtacctggctcgtcggtaaccgacgtgccaggtacgccggGCAACGAAGGc                                                                                                                                                               >  1:1146869‑M1/113‑123 (MQ=255) ttgacgttctcggccaccgaagtctggtcggctgtgatggtgaccttgaccagggcgccttcgttgcccggcgtacctggctcgtcggtaaccgacgtgccaggtacgccggGCAACGAAGGc                                                                                                                                                               <  2:1146866‑M1/11‑1 (MQ=255)                                                      gtcgccttcgttgcccggcgtacctggctagtcggtacccgacgagccaggtacgccggGCAACGAAGGCGACCTGGTCAAGGTCACCATc                                                                                                                                          >  1:423296‑M1/60‑91 (MQ=255)                                                                           acctggctcgtcggtaaccgacgagccaggtacgccggGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGGCAAACCGACCTTCACTGTTCACGTCaa                                                                               <  2:683527‑M1/91‑1 (MQ=255)                                                                                              gacgagccaggtacgccggGCAACGAAGGCGACCTGGTCaa                                                                                                                                                    >  1:856510‑M1/20‑41 (MQ=255)                                                                                              gacgagccaggtacgccggGCAACGAAGGCGACCTGGTCaa                                                                                                                                                    <  2:856508‑M1/22‑1 (MQ=255)                                                                                                    acaggtacgccggGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAgcg  >  1:578446‑M1/14‑181 (MQ=255)                                                                                                     caggtacgccggGCAACGAAGGCGACCTGGTCAAgg                                                                                                                                                  >  1:1433411‑M1/13‑36 (MQ=255)                                                                                                     caggtacgccggGCAACGAAGGCGACCTGGTCAAgg                                                                                                                                                  <  2:1433408‑M1/24‑1 (MQ=255)                                                                                                      gggtgcgccggGCAACGAGGGCGACCTGGTGAAGGTCACCATCACGGCCGACCAGACTGCGGTAGCCGAGAACGTCGAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCAcgt                                                             >  2:51426‑M1/12‑119 (MQ=255)                                                                                                        ggacgccggGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCGTCACGGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAAt                                    >  2:16844‑M1/10‑143 (MQ=255)                                                                                                                gGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGt                                                       >  1:1474479‑M1/2‑116 (MQ=255)                                                                                                                 |                                                                                                                                                                        GCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACTACCGTCACCGACGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCG  >  AE015451/204506‑204785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.