New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	208966 =	NA (NA)	9 (0.110)	9/340	NT	11.0%	coding (14472/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	208967 =	76 (0.880)					coding (14473/26049 nt)	PP_0168	putative surface adhesion protein

ACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCCGACGTAGACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTaccgaagg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/209193‑208966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAAGTT  >  AE015451/208967‑209202                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCCGACGTAGACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGG                                                                                                                                                                                                                                      >  1:1392117/1‑236                                     gCAGGGTCGGTGGTGCCGGCGTAGACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCG                                                                                                                                                                                                                                          <  2:153922/195‑1                                              TTGGTGCCGACGTAGACGGTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCG                                                                                                                                                                                                                                          <  1:21256/187‑1                                                      GACGTAGACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCG                                                                                                                                                                                                                                 >  2:598696/1‑188                                                             ACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGC                                                                                                                                                                                                                                  <  2:1303494/180‑1                                                             ACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTAATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCG                                                                                                                                                                                                                                          <  1:210153/172‑1                                                                     CGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGGCCATCTTTGTTGGTCAGCGTGATGGGGTAGGTGATCTCGCCGCCTTCGGTTAtc                                                                                                                                                                                                                                           >  2:264120/1‑161                                                                            GTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACACCATCACGCTG                                                                                                                                                                                                          <  1:598698/189‑1                                                                                                     CGTTAGCCCGGATGGTGATGGTGGTTTTGCCCTCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGG                                                                                                                                                                                                                                      <  2:186911/136‑1                                                                                                            CGGGATGGTGATGGTGGTTTGGCCATCGTCCAGGGTAAAGGTCAGAGCCTTATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGC                                                                                                                                                                    <  1:798391/195‑1                                                                                                                        GGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGA                                                                                                                                                                                <  1:300258/171‑1                                                                                                                                     TCGTCCAGGGTAAAGGTGAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCT                                                                                                                                                                                     <  2:1107334/153‑1                                                                                                                                        TCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACACCATC                                                                                                                                                                                                                <  1:3586/123‑1                                                                                                                                                    GTCAGCGCCGCAGTCTTGTCGATCGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATC                                                                                                                                                                                                                            <  2:45005/99‑1                                                                                                                                                                                                       attGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAACGCGGCGAGATCACGGACACTATCACGCTCGCCAACAAAGATGGTCTGCCTATCGAGAAGCATGCGGCGCTGACCTTTTCCCTGGACGATGGCAAAAC                                                                                                                                      <  2:1278128/131‑1                                                                                                                                                                                                                     CTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCAACTACACCATCACACTGACCAACAAAGATGGTCTGC                                                                                                                                                                                       <  1:50352/71‑1                                                                                                                                                                                                                           GCCTTCGGTTACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCG                                                                                                                      <  2:889824/130‑1                                                                                                                                                                                                                                     ACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAA     >  2:513036/1‑233                                                                                                                                                                                                                                       CGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGT                   >  2:1232261/1‑217                                                                                                                                                                                                                                       CGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGT                   <  1:1232264/217‑1                                                                                                                                                                                                                                        GAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAAGTT  >  2:868750/1‑233                                                                                                                                                                                                                                        GAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGGAA     >  1:464203/1‑230                                                                                                                                                                                                                                         AAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGAACAACCGGCACTGCCA                                                                                             >  2:306376/1‑141                                                                                                                                                                                                                                          AGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGCTGGTCTGCCTATCGACAAGAATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAA                                                                                                                 >  1:701129/1‑120                                                                                                                                                                                                                                            GCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAA                                                                                                                 >  1:800237/1‑118                                                                                                                                                                                                                                            GCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAA                                                                                                                 <  2:800235/118‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGTCCGCACCTCCAACGGTTGCGATCGACATCACGACAGGGTCGTTGGTGCCGACGTAGACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTaccgaagg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/209193‑208966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAAGTT  >  AE015451/208967‑209202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.