New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	707029 =	71 (0.830)	5 (0.070)	5/304	NT	7.7%	intergenic (+205/+41)	PP_0599/rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
	?	AE015451	707055 =	60 (0.820)					intergenic (+231/+15)	PP_0599/rpsT	paraquat‑inducible protein B/30S ribosomal protein S20

GCGTTCCATGGTCCGCACCTACATCAAGAATGTAGTTAAAGCCATCGACGCAAAAGACGCCGAAAAAGCGCAAGCCGCTTACGTTCTGGCTGTACCTGTAATCGACCGTATGGCCGACAAGGGTATCATCCACAAGAACAAGGCTGCTCGTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/707277‑707029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaccgaccctagggtcggtttttCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAAC  >  AE015451/707055‑707275                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCGTTCCATGGTCCGCACCTACATCAAGAATGTAGTTAAAGCCATCGACGCAAAAGACGCCGAAAAAGCGCAAGCCGCTTACGTTCTGGCTGTACCTGTAATCGACCGTATGGCCGACAAGGGTATCATCCACAAGAACAAGGCTGCTCGTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAA                                                                                                                                                                                                                                                     <  1:888475/227‑1           GTCCGCACCTACATCAAGAATGTAGTTAAAGCCATCGACGCAAAAGACGCCGAAAAAGCGCAAGCCGCTTACGTTCTGGCTGTACCTGTAATCGACCGTATGGCCGACAAGGGTATCATCCACAAGAACAAGGCTGCTCGTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCGGTT                                                                                                                                                                                                                                  >  1:1481474/1‑236                                  AGTTAAAGCCATCGACGCAAAAGACGCCGAAAAAGCGCAAGCCGCTTACGTTCTGGCTGTACCTGTAATCGACCGTATGGCCGACAAGGGTATCATCCACAAGAACAAGGCTGCTCGTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCG                                                                                                                                                                                                                                     >  1:395457/1‑210                                                              GAAAAAGCGCAAGCCGCTTACGTTCTGGCTGTACCTGTAATCGACCGTATGGCCGACAAGGGTATCATCCACAAGAACAAGGCTGCTCGTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAG                                                                                                                                                                                                                                          <  1:1319246/177‑1                                                                                               CCTGTAATCGACCGTATGGCCGACAAGGGTATCATCCACAAGAACAAGGCTGCTCGTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGC                                                                                                                                                                                       <  1:88637/195‑1                                                                                                            GTATGGCCGACAAGGGTATCATCCACAAGAACAAGGCTGCTCGTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGCAAGACGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGCCGG                                                                                                                                                                                                                                    >  2:1138/1‑137                                                                                                                                                      GTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGAT                                                                                                                               >  1:251711/1‑196                                                                                                                                                                   TCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTT                                                                                                                                                                                            <  1:257268/122‑1                                                                                                                                                                     TGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAACACCGACCCTAGGGTCG                                                                                                                                                                                                                                     >  2:9806/1‑79                                                                                                                                                                                ATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGAC                                                                                                                                                                 >  2:1096576/1‑136                                                                                                                                                                                             AAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCTCCTTGATGTGGCCATTCAGACGGCCTTTGTTACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCAT                                                                                                             >  2:874819/1‑175                                                                                                                                                                                                                                    ACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTT                                                                       <  2:108781/174‑1                                                                                                                                                                                                                                     CCGGCCATAGGGTCGGGTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTA                   <  1:1217799/225‑1                                                                                                                                                                                                                                     CCGACCCTAGGGTCGGTTTTTCGACTGGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTC                                                                                                       <  2:1387122/141‑1                                                                                                                                                                                                                                      CGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTC                                                             <  1:706146/182‑1                                                                                                                                                                                                                                         CCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTT                                     >  1:242050/1‑203                                                                                                                                                                                                                                           CTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAAC  >  2:1044406/1‑236                                                                                                                                                                                                                                           CTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCGTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCG                                                                           >  2:1178369/1‑163                                                                                                                                                                                                                                              GGGTCGGTTTTTCGACTAGCGCGTCGCTTATGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCC                                                                                                               <  2:1218045/124‑1                                                                                                                                                                                                                                                        gTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTGCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACAT                             <  2:342907/195‑1                                                                                                                                                                                                                                                         TCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGAGGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTG                        <  2:227199/200‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCGTTCCATGGTCCGCACCTACATCAAGAATGTAGTTAAAGCCATCGACGCAAAAGACGCCGAAAAAGCGCAAGCCGCTTACGTTCTGGCTGTACCTGTAATCGACCGTATGGCCGACAAGGGTATCATCCACAAGAACAAGGCTGCTCGTCACAAAGGCCGTCTGAATGGCCACATCAAGGCGCTGAAAGAAGCTGCAGCTGCCTAAGCGACGCGCTAGTCGAAAAACCGACCCTAGGGTCGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/707277‑707029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaccgaccctagggtcggtttttCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCCATTCAGACGGCCTTTGTGACGAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAAC  >  AE015451/707055‑707275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.