New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	841064 =	58 (0.670)	3 (0.040)	3/344	NT	5.2%	coding (260/618 nt)	lolB	Outer‑membrane lipoprotein LolB
	?	AE015451	841079 =	53 (0.640)					coding (245/618 nt)	lolB	Outer‑membrane lipoprotein LolB

GCTGGCCGGCTGCGCCGGCTTCGGTAGCCGTGAGGCCCTGCAGGGCCACGGCGACCCGCAACAGTGGCGCGCCCACAAAGCGCAGCTGAGCAGCCTCGATGGCTGGCAGATCAACGGCAAGGTCGGCATCCGCGCCCCGCGCGATTCCGGCAGCGGTACGCTGTTCTGGCTGCAACGCCAGGATTATTACGACATTCGCCTGGCCGGCCCGCTGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/841282‑841064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgGCCAGGCGAATGTCGTAATAATCCTGGCGTTGCAGCCAGAACAGCGTACCGCTGCCGGAATCGCGCGGGGCGCGGATGCCGACCTTGCCGTTGATCTGCCAGCCATCGAGGCTGCTCAGCTGCGCTTTGTGGGCGCGCCACTGTTGCGGGTCGCCGTGGCCCTGCAGGGCCTCACGGCTACCGAAGCCGGCGCAGCCGGCCAGCAGGGCGATCAAGGTAAAGGTGATGC  >  AE015451/841079‑841307                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCTGGCCGGCTGCGCCGGCTTCGGTAGCCGTGAGGCCCTGCAGGGCCACGGCGACCCGCAACAGTGGCGCGCCCACAAAGCGCAGCTGAGCAGCCTCGATGGCTGGCAGATCAACGGCAAGGTCGGCATCCGCGCCCCGCGCGATTCCGGCAGCGGTACGCTGTTCTGGCTGCAACGCCAGGATTATTACGACATTCGCCTGGCCGGCCCGCTGGGCCG                                                                                                                                                                                                                                       >  2:669371/1‑219                                                                                GCGCAGCTGAGCAGCCTCGATGGCGGGCAGATCAACGGCAAGGTCGGCATCCGCGCCCCGCGCGATTCCGGCAGCGGTACGCTGTTCTGGCTGCAACGCCAGGATTATTACGACATTCGCCTGGCCGGCCCGCTGGGCC                                                                                                                                                                                                                                        <  2:23075/139‑1                                                                                              CCTCGATGGCTGGCAGATCAACGGCAAGGTCGGCATCCGCGCCCCGCGCGATTCCGGCAGCGGTACGCTGTTCTGGCTGCAACGCCAGGATTATTACGACATTCGCCTGGCCGGCCCGCTGGGCCGGCCAGGCGAATGTCGTAATAATCCTGGCGTTGCAGCCAGAACAGCGT                                                                                                                                                                                        >  1:1442437/1‑173                                                                                              CCTCGATGGCTGGCAGATCAACGGCAAGGTCGGCATCCGCGCCCCGCGCGATTCCGGCAGCGGTACGCTGTTCTGGCTGCAACGCCAGGATTATTACGACATTCGCCTGGCCGGCCCGCTGGGCCGGCCAGGCGAATGTCGTAATAATCCTGGCGTTGCAGCCAGAACAGCGT                                                                                                                                                                                        <  2:1442434/173‑1                                                                                                                                    GCGCCCCGCGCGATTCCGGCAGCGGTACGCTGTTCTGGCTGCAACGCCAGGATTATTACGACATTCGCCTGGCCGGCCCGCTGGGCCGGCCAGGCGAATGTCGTAATAATC                                                                                                                                                                                                                <  2:1379102/111‑1                                                                                                                                                                                                                       GGCCGGCCAGGCGAATGTCGTAATAATCCTGGCGTTGCAGGCAGAACAGCGTACCGCTGCCGGAATCGCGCGGGGCGCGGATGCCGACCTTGCCGTTGATCTGCCAGCCATCGAGGCTGCTCAGCTGCGCTTTGTGG                                                                                                   <  1:653800/137‑1                                                                                                                                                                                                                       GGCCGGCCAGGCGAATGTCGTAATAATCCTGGCGTTGCAGCCAGAACAGCGTACCGCTGCCGGAATCGCGCGGGGCGCGGATGCCGACCTTGCCGTTGATCTGCCAGCCATCGAGGCTGCTCAGCTGCGCTTTGTGGGCGCGCCACTGTTGCGGGTCGCCGTGGCCCTGCAGGGCCTCACGGCTACCGAAGCCGGCGCAGCCGGCCAGCAGGGCGATCAAGGTAAAGGTGATGC  <  2:1418343/234‑1                                                                                                                                                                                                                       GGCCGGCCAGGCGAATGTCGTAATAATCCTGGCGTTGCAGCCAGAACAGCGTACCGCTGCCGGAAGCGCGCGGGGCGCGGATGCCGACCTTGCCGTTGATCTGCCAGCCATCGAGGCTGCTCAGCTGCGCTTTGTGGGCGCGCCACTGTTGCGGGTCGCCGTGGCCCTGCAGGGCCTCACGGCTACCGAAGCCGGCGCAGCCGGCCAGCAGGGCGATCAA                <  2:1339562/220‑1                                                                                                                                                                                                                           GGCCAGGCGAATGTCGTAATAATCCTGGCGTTGCAGCCAGAACAGCGTACCGCTGCCGGAATCGCGCGGGGCGCGGATGCCGACCTTGCCGTTGATCTGCCAGCCATCGAGGCTGCTCAGCTGCGCTTTGTGGGCGCGCCACTGTTGCGGGTCGCCGTGGCC                                                                      >  2:1110583/1‑162                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCTGGCCGGCTGCGCCGGCTTCGGTAGCCGTGAGGCCCTGCAGGGCCACGGCGACCCGCAACAGTGGCGCGCCCACAAAGCGCAGCTGAGCAGCCTCGATGGCTGGCAGATCAACGGCAAGGTCGGCATCCGCGCCCCGCGCGATTCCGGCAGCGGTACGCTGTTCTGGCTGCAACGCCAGGATTATTACGACATTCGCCTGGCCGGCCCGCTGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/841282‑841064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgGCCAGGCGAATGTCGTAATAATCCTGGCGTTGCAGCCAGAACAGCGTACCGCTGCCGGAATCGCGCGGGGCGCGGATGCCGACCTTGCCGTTGATCTGCCAGCCATCGAGGCTGCTCAGCTGCGCTTTGTGGGCGCGCCACTGTTGCGGGTCGCCGTGGCCCTGCAGGGCCTCACGGCTACCGAAGCCGGCGCAGCCGGCCAGCAGGGCGATCAAGGTAAAGGTGATGC  >  AE015451/841079‑841307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.