New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1132549 =	76 (0.880)	5 (0.060)	5/328	NT	6.8%	coding (68/288 nt)	PP_0993	conserved exported protein of unknown function
	?	AE015451	1132563 =	67 (0.850)					coding (54/288 nt)	PP_0993	conserved exported protein of unknown function

TGCCCTTGGCTTCAACATCAGGTCGTGAAGACTCGCCCTGAAAAAATTTCTTCCAAGGCTGTAACCCGTTTTACGCAAGGCACGAATTACTCCATGAGCCGCCGGTATAGACCACGGCCACACTCTCAGGAGATTGACCATGAAAACCCTCGCCCTCACCACCGCAGCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1132755‑1132549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccatggcggcGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTCAATCTCCTGAGAGTGTGGCCGTGGTCTATACCGGCGGCTCATGGAGTAATTCGTGCCTTGCGTAAAACGGGTTACAGCCTTGGAAGAAATTTTTTCAGGGCGAGTCTTCACGACCTGATGTTGAAGCCAAGGGCATGGCATATTTGCAGCACCTGCGTGCCACACGGCGG  >  AE015451/1132563‑1132790                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCCCTTGGCTTCAACATCAGGTCGTGAAGACTCGCCCTGAAAAAATTTCTTCCAAGGCTGTAACCCGTTTTACGCAAGGCACGAATTACTCCATGAGCCGCCGGTATAGACCACGGCCACACTCTCAGGAGATTGACCATGAAAACCCTCGCCCTCACCACCGCAGCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGCGCCTGCAAGCGTGGCAAGCGCGAGTGCTG                                                                                                                                                                                                         <  1:565946/236‑1          CTTCAACATCAGGTCGTGAAGACTCGCCCTGAAAAAATTTCTTCCAAGGCTGTAACCCGTTTTACGCAAGGCACGAATTACTCCATGAGCCGCCGGTATAGACCACGGCCACACTCTCAGGAGATTGACCATGAAAACCCTCGCCCTCACCACCGCAGCACTCGCGCTTGCCACGCTTGCAGCCGCCGCCATCGCGcccgc                                                                                                                                                                                                                                   >  2:398057/1‑196                                                                                                                              TCAGGAGATTGACCATGAAAACCCTCGCCCTCACCACCGCAGCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGCGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGgg                                                                                                                                                                                                    >  2:415063/1‑114                                                                                                                                           CATGAAAACCCTCGCCCTCACCACCGCAGCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGCGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTCAATCTCCTGAGAGTGTGGCCGTGGTCTATACCGGCGGCTCATGGAGTAATTCGTGCCTTGCGTAAAACGGGTTACAGCC                                                                                             >  2:1063306/1‑206                                                                                                                                                  cCCCTCGCCCTCACCACCGCAGCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGCGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTC                                                                                                                                                                            <  1:741180/119‑1                                                                                                                                                                                         gTTGCAGGCGCCGCCGTGGCGGCGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTCA                                                                                                                                                                           <  2:1085544/81‑1                                                                                                                                                                                                       CATGGCGGCGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTCAATCTCCTGAGAGTGTGGCCGTGGTCTATACCGGCGGCTCATGGAGTAATTCGTGCCTTGCGTAAAACGGGTTACAGCCTTGGAAGAAATTTTTTCAGGGCGAGTCTTCACGACCTGATGTTGAAGCCAAGGGCATGGCATATTTGCAGCACCTGCGTGCCACACGGCG   <  1:623708/236‑1                                                                                                                                                                                                         TGGCGGGGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTCAATCTCCTGAGAGTGTGGCCGTGGTCTATACCGGCGGCTCATGGAGTAATTCGTGCCTTGCGTAAAACGGGTTACAGCCTTGGAAGAAATTTTTTCAGGGCGAGTCTTCACGACCTGATATTGAAGCCAAGGGCATGGCATATTTGCAGCACCTGCGTGCCACACGGCGG  <  1:1391111/235‑1                                                                                                                                                                                                         TGGCGGCGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTCAATCTCCTGAGAGTGTGGCCGTGGTCTATACCGGCGGCTCATGGAGTAATTCGTGCCTTGCGTAAAACGGGTT                                                                                                   <  2:450675/138‑1                                                                                                                                                                                                              GCGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTCAATCTCCTGAGAGTGTGGCCGTGGTCTATACCGGCGGCTCATGGAGTAATTCGTGCCTTGCGTAAAACGGGTTACAGCCTTGGAAGAAATTTTTTCAGGGCGAGTCTTCACGACCTG                                                       >  1:1135476/1‑177                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCCCTTGGCTTCAACATCAGGTCGTGAAGACTCGCCCTGAAAAAATTTCTTCCAAGGCTGTAACCCGTTTTACGCAAGGCACGAATTACTCCATGAGCCGCCGGTATAGACCACGGCCACACTCTCAGGAGATTGACCATGAAAACCCTCGCCCTCACCACCGCAGCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1132755‑1132549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccatggcggcGCCTGCAAGCGTGGCAAGCGCGAGTGCTGCGGTGGTGAGGGCGAGGGTTTTCATGGTCAATCTCCTGAGAGTGTGGCCGTGGTCTATACCGGCGGCTCATGGAGTAATTCGTGCCTTGCGTAAAACGGGTTACAGCCTTGGAAGAAATTTTTTCAGGGCGAGTCTTCACGACCTGATGTTGAAGCCAAGGGCATGGCATATTTGCAGCACCTGCGTGCCACACGGCGG  >  AE015451/1132563‑1132790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.