New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3311637	82 (0.950)	6 (0.070)	6/332	NT	7.2%	coding (1351/1392 nt)	gabP‑III	gamma‑aminobutyrate permease
	?	AE015451	= 3311625	78 (0.970)					coding (1339/1392 nt)	gabP‑III	gamma‑aminobutyrate permease

TGGTGTATCTGGTCATCGCCATTTCCCAGCTGCGCCTGCGCCAGCGCCTGACGGCACAGGGCAAGACACTGGGTTATCGCATGTGGCTGTTCCCGTGGCTGACCTGGGGCGTGATCCTGTTCATCAGCGGCGTACTGGTATTGATGCTGTTCCGCCCGGATCATCGCCTGGAAGTGGTCTCGACGATGGTGCTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGTGACCCGGCGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3311398‑3311637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcgccgggTCACCAGCACCCCCGAGCACACCACCAACACCGCCAGCACCATCGTCGAGACCACTTCCAGGCGATGATCCGGGCGGAACAGCATCAATACCAGTACGCCGCTGATGAACAGGATCACGCCCCAGGTCAGCCACGGGAACAGCCACATGCGATAACCCAGTGTCTTGCCCTGTGCCGTCAGGCGCTGGCGCAGGCGCAGCTGGGAAATGGCGATGACCAGATACACC  <  AE015451/3311625‑3311399                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGGTGTATCTGGTCATCGCCATTTCCCAGCTGCGCCTGCGCCAGCGCCTGACGGCACAGGGCAAGACACTGGGTTATCGCATGTGGCTGTTCCCGTGGCTGACCTGGGGCGTGATCCTGTTCATCAGCGGCGTACTGGTATTGATGCTGTTCCGCCCGGATCATCGCCTGGAAGTGGTCTCGACGATGGTGCTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGTGACCCGGCGC                                                                                                                                                                                                                                         >  1:1107312/1‑236                        TCCCAGCTGCGCCTGCGCCAGCGCCTGACGGCACAGGGCAAGACACTGGGTTATCGCATGTGGCTGTTCCCGTGGCTGACCTGGGGCGTGATCCTGTTCATCAGCGGCGTACTGGTATTGATGCTGTTCCGCCCGGATCATCGCCTGGAAGTGGTCTCGACGATGGTGCTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGTGACCCGGCGCCGGGTCACCAGCACCCCCGAG                                                                                                                                                                                                                    <  1:1059703/234‑1                          CCAGCTGCGCCTGCGCCAGCGCCTGACGGCACAGGGCAAGACACTGGGTTATCGCATGTGGCTGTTCCCGTGGCTGACCTGGGGCGTGATCCTGTTCATCAGCGGCGTACTGGTATTGATGCTGTTCCGCCCGGATCATCGCCTGGAAGTGGTCTCGACGATGGTGCTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGTGACCCGGC                                                                                                                                                                                                                                           <  2:1107309/209‑1                                                                    ACTGGGTTATCGCATGTGGCTGTTCCCGTGGCTGACCTGGGGCGTGATCCTGTTCATCAGCGGCGTACTGGTATTGATGCTGTTCCGCCCGGATCATCGCCTGGAAGTGGTCTCGACGATGGTGCTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGTGACCCGGCGCCGGGTCACCAGCACCCCCGAGCACACCACCAACACCGCCAGCCCCATCGTCGAGACCACTTCCctct                                                                                                                                                                      >  1:1363075/1‑232                                                                                                                                                  GCTGTTCCGCCCGGATCATCGCCTGGAAGTGGTCTCGACGATGGTGCTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGCGACCCGGCGCCGGGTCACCAGCACCCCCGAGCACACCACCAACACCGCCAGCACCATCGTCGAGAC                                                                                                                                                                                 >  1:645273/1‑147                                                                                                                                                           CCCGGATCATCGCCTGGAGGTGGTCTCGACGCTGGTGGTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGTGACCCGGCGCCGGGTCACCAGCACCCCCGAGCACACCACCAACACCGCCAGCACCATCG                                                                                                                                                                                        <  2:1363072/131‑1                                                                                                                                                                                              TGCTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGTGACACGGCGCCGGGACACCAGCGCCCCCGAGCACACGACCAACACCGCCAGCAGCATCGTCGAGACCAC                                                                                                                                                                              >  2:645271/1‑106                                                                                                                                                                                                        GTTGGTGGTGTGCTCGGGGGTGCTGGTGACCCGGCGCCGGGTCACCAGCACCCCCGAGCAGACCACCAACACCGCCAGCCCCATCGTCGAGACCACTTCCAGGCGATGAGCCGGGCGGAACA                                                                                                                                                    >  2:846096/1‑122                                                                                                                                                                                                                                         GCGCCGGGTCACCAGCACCCCCGCGCACACCACCAACACCGCCAGCACCATCGTCGAGACCACTTCCAGGCGATGATCCGGGCGGAACAGCATCAATACCAGTACGCCGCTGATGAACAGGATCACGCCCCAGGTCAGCCACGGGAACAGCCACATGCGATAACCCAGTGTCTTGCCCTGTGCCGTCAGGCGCTGGCGCAGGCGCAGCTGGGAAATGGTGATGACCAGATACACC  <  2:650768/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGGTGTATCTGGTCATCGCCATTTCCCAGCTGCGCCTGCGCCAGCGCCTGACGGCACAGGGCAAGACACTGGGTTATCGCATGTGGCTGTTCCCGTGGCTGACCTGGGGCGTGATCCTGTTCATCAGCGGCGTACTGGTATTGATGCTGTTCCGCCCGGATCATCGCCTGGAAGTGGTCTCGACGATGGTGCTGGCGGTGTTGGTGGTGTGCTCGGGGGTGCTGGTGACCCGGCGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3311398‑3311637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcgccgggTCACCAGCACCCCCGAGCACACCACCAACACCGCCAGCACCATCGTCGAGACCACTTCCAGGCGATGATCCGGGCGGAACAGCATCAATACCAGTACGCCGCTGATGAACAGGATCACGCCCCAGGTCAGCCACGGGAACAGCCACATGCGATAACCCAGTGTCTTGCCCTGTGCCGTCAGGCGCTGGCGCAGGCGCAGCTGGGAAATGGCGATGACCAGATACACC  <  AE015451/3311625‑3311399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.