New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3398276 = | 65 (0.760) | 5 (0.060) | 5/338 | NT | 6.7% | coding (757/819 nt) | PP_3002 | shikimate dehydrogenase‑related enzyme |
? | AE015451 | 3398411 = | 77 (0.940) | coding (69/438 nt) | aroQ‑III | 3‑dehydroquinate dehydratase 3, type II |
GCACATGGCGCCCTCGAAGTTGCTCTGGAAGCTCTCGACCTGTGCCCCCAGCTCCTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCG‑ACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3398519‑3398276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTG > AE015451/3398411‑3398645 GCACATGGCGCCCTCGAAGTTGCTCTGGAAGCTCTCGACCTGTGCCCCCAGCTCCTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCG‑ACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACC < 1:659878/236‑1 ACATGGCGCCCTCGAAGTTGCTCTGGAAGCTCTCGACCTGTGCCCCCAGCTCCTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCG‑ACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCC < 1:671106/236‑1 GTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCGAACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGC > 1:958336/1‑165 GTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCGAACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGC < 2:958334/165‑1 CGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCG‑ACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCCAAGGTCGAGTGCTTCCAGAGCAACTTCG > 2:941727/1‑227 CGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCG‑ACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCC > 2:987559/1‑123 GTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCG‑ACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGC > 1:637384/1‑236 ATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGGACCC > 2:1022193/1‑62 CAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATT > 1:163222/1‑236 AATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCT > 1:226710/1‑236 AGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAG > 2:1495788/1‑55 GCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGG < 2:816504/233‑1 CAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCC > 1:1054019/1‑210 AGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGCGCAGCTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTG < 1:799316/236‑1 GCACATGGCGCCCTCGAAGTTGCTCTGGAAGCTCTCGACCTGTGCCCCCAGCTCCTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCG‑ACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3398519‑3398276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTG > AE015451/3398411‑3398645 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |