New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3643473	71 (0.830)	4 (0.050)	4/336	NT	5.6%	coding (574/804 nt)	PP_3210	ABC transporter, permease protein
	?	AE015451	= 3643535	67 (0.830)					coding (512/804 nt)	PP_3210	ABC transporter, permease protein

TTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGCCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3643230‑3643473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccgctggcAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCTTGGCCTTGATCGGCGCGGTGGTGGCCGAGTTCGTCGCCGGTACGGGCGGCACGGGTGCGGGCCTGGCGTATCAGATCCTGCAAGCGGGATTCCAGCTCAACATCCCCCGCCTATTCGCCGCCCTG  <  AE015451/3643535‑3643339                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAG                                                                                                                                                                                                               <  1:1455485/236‑1  TTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGC                                                                                                                                                                                                              >  1:1341858/1‑236                        TCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGCCGCTGGC                                                                                                                                                                                                       >  1:538879/1‑221                                                                AAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCCCCGCGCCGATCAAGGCCAAGCCGCTGGC                                                                                                                                                                                                       >  1:1123268/1‑181                                                                         GGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGC                                                                                                                                                                                                              >  2:780849/1‑165                                                                                                                        AATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACTCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGC                                                                                                                                                                                                              >  2:825716/1‑118                                                                                                                        AATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTCCTTTTTCGCTGGCCTGCGC                                                                                                                                            >  2:44498/1‑184                                                                                                                           AGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTCCTTTTTCGCTGGCCTGCGCATC                                                                                                                                         <  1:44498/184‑1                                                                                                                                                                                                         ACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCACTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCTTGGCCTTGATCGGCG                                                                                                                >  2:565200/1‑131                                                                                                                                                                                                                                    AAGGCCAAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCTTGGCCTTGATCGGCGCGGTGGTGGCCGAGTTCGTCGCCGGTACGGGCGGCACGGGTGCGGGCCTGGCGTATCAGATCCTGCAAGCGGGATTCCAGCTCAACATCCC                     >  2:707965/1‑195                                                                                                                                                                                                                                               GCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCTTGGCCTTGATCGGCGCGGTGGTGGCCGAGTTCGTCGCCGGTACGGGCGGCACGGGTGCGGGCCTGGCGGATCAGATCCTGCAAGCGGGATTCCAGCTCAACATCCCCCGCCTATTCGCCGCCCTG  >  1:232521/1‑203                                                                                                                                                                                                                                                   GCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCTTGGCCTTGATCGGCGCGGTGGTGGCCGAGTTCGTCGCCGGTACGGGCGGCACGGGTGCGGGC                                                                 <  2:1118438/136‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCCGATCAAGGCCAAGCCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3643230‑3643473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccgctggcAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCTTGGCCTTGATCGGCGCGGTGGTGGCCGAGTTCGTCGCCGGTACGGGCGGCACGGGTGCGGGCCTGGCGTATCAGATCCTGCAAGCGGGATTCCAGCTCAACATCCCCCGCCTATTCGCCGCCCTG  <  AE015451/3643535‑3643339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.